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# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|16758994|ref|NP_454611.1| thr operon leader peptide (STY0001) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 21 COG0516 1-21 -2.870 42  [D] COG3096 Uncharacterized protein involved in chromosome partitioning
2 gi|16758995|ref|NP_454612.1| bifunctional aspartokinase I/homeserine dehydrogenase I (STY0002) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 820 COG0516 1-483 -106.000 26  [E] COG0527 Aspartokinases
456-820 -113.000 68  [E] COG0460 Homoserine dehydrogenase
3 gi|16758996|ref|NP_454613.1| homoserine kinase (STY0003) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 309 COG0516 2-309 -110.000 70  [E] COG0083 Homoserine kinase
4 gi|16758997|ref|NP_454614.1| threonine synthase (STY0004) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 428 COG0516 1-427 -104.000 29  [E] COG0498 Threonine synthase
5 gi|16758998|ref|NP_454615.1| hypothetical protein (STY0005) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 257 COG0516 1-257 -128.000 86  [S] COG3022 Uncharacterized protein conserved in bacteria
6 gi|16758999|ref|NP_454616.1| putative amino-acid transport protein (STY0006) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 476 COG0516 1-471 -134.000 43  [E] COG1115 Na+/alanine symporter
7 gi|16759000|ref|NP_454617.1| transaldolase B (STY0007) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 317 COG0516 1-317 -152.000 87  [G] COG0176 Transaldolase
8 gi|16759001|ref|NP_454618.1| molybdenum cofactor biosynthesis protein MogA (STY0008) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 196 COG0516 2-191 -100.000 75  [H] COG0521 Molybdopterin biosynthesis enzymes
9 gi|16759002|ref|NP_454619.1| hypothetical protein (STY0009) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 188 COG0516 3-184 -96.200 65  [S] COG1584 Predicted membrane protein
10 gi|16759003|ref|NP_454620.1| hypothetical protein (STY0010) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 237 COG0516 1-237 -81.000 87  [S] COG4735 Uncharacterized protein conserved in bacteria
11 gi|16759004|ref|NP_454621.1|(removed signalp:1-23) hypothetical protein (STY0011) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 111 COG0516 30-97 -5.480 19  [R] COG4455 Protein of avirulence locus involved in temperature-dependent protein secretion
12 gi|16759005|ref|NP_454622.1| molecular chaperone DnaK (STY0012) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 638 COG0516 1-638 -193.000 56  [O] COG0443 Molecular chaperone
13 gi|16759006|ref|NP_454623.1| chaperone protein DnaJ (STY0013) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 379 COG0516 1-375 -139.000 58  [O] COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain
14 gi|16759007|ref|NP_454624.1| putative regulatory protein (STY0014) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 315 COG0516 8-313 -28.300 14  [K] COG0583 Transcriptional regulator
15 gi|16759008|ref|NP_454625.1| hypothetical protein (STY0015) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 114 COG0516 18-94 -10.700 13  [D] COG0239 Integral membrane protein possibly involved in chromosome condensation
16 gi|16759009|ref|NP_454626.1| hypothetical protein (STY0016) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 177 COG0516 1-175 -72.700 25  [R] COG3926 Putative secretion activating protein
17 gi|16759010|ref|NP_454627.1| hypothetical protein (STY0017) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 147 COG0516 2-132 -42.500 15  [K] COG3710 DNA-binding winged-HTH domains
18 gi|16759011|ref|NP_454628.1| putative chitinase (STY0018) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 699 COG0516 1-512 -140.000 97  [G] COG3325 Chitinase
178-695 -21.300 [R] COG3858 Predicted glycosyl hydrolase
19 gi|16759012|ref|NP_454629.1| hypothetical protein (STY0019) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 383 COG0516 299-381 -10.700 14  [S] KOG3306 Predicted membrane protein
20 gi|16759013|ref|NP_454630.1| hypothetical protein (STY0020) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 620 COG0516 256-607 -10.100 13  [G] COG5297 Cellobiohydrolase A (1,4-beta-cellobiosidase A)


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ye Y, Godzik A. FATCAT: a web server for flexible structure comparison and structure similarity searching. Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W582-5.