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# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|6319249|ref|NP_009332.1|(removed signalp:1-20) hypothetical protein; Pau8p (YAL068C) [Saccharomyces cerevisiae] 100 PfamA30U 2-95 -48.400 23  PF00660.15; E7KHT3_YEASA/13-116; Seripauperin and TIP1 family
2 gi|33438754|ref|NP_878038.1| Putative protein of unknown function; identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching; Yal067w-ap (YAL067W-A) [Saccharomyces cerevisiae] 75 PfamA30U 3-75 -7.300 14  PF03029.15; O01426_CAEEL/6-251; Conserved hypothetical ATP binding protein
3 gi|6319250|ref|NP_009333.1| Putative permease, member of the allantoate transporter subfamily of the major facilitator superfamily; mutation confers resistance to ethionine sulfoxide; Seo1p (YAL067C) [Saccharomyces cerevisiae] 593 PfamA30U 96-593 -11.300 PF06609.11; Q8NII4_FUSAU/1-598; Fungal trichothecene efflux pump (TRI12)
143-514 -16.200 10  PF07690.14; Q9KBG2_BACHD/16-398; Major Facilitator Superfamily
159-552 -15.400 10  PF06779.12; Q8Y185_RALSO/36-399; Uncharacterised MFS-type transporter YbfB
4 gi|6319252|ref|NP_009335.1| Putative protein of unknown function; has homology to FLO1; possible pseudogene; (YAL065C) [Saccharomyces cerevisiae] 128 PfamA30U 72-127 -6.560 20  PF15706.3; W5Q6M8_SHEEP/854-937; Mature oligodendrocyte transmembrane protein, TMEM132D, C-term
5 gi|6319253|ref|NP_009336.1| Fungal-specific protein of unknown function; Yal064w-bp (YAL064W-B) [Saccharomyces cerevisiae] 126 PfamA30U 26-103 -6.260 18  PF11947.6; K9VCC6_9CYAN/5-154; Protein of unknown function (DUF3464 topsan)
6 gi|7839146|ref|NP_058136.1| Putative protein of unknown function; YAL064C-A is not an essential gene; Yal064c-ap (YAL064C-A) [Saccharomyces cerevisiae] 126 PfamA30U 1-117 -49.800 14  PF10528.7; YQ39_SCHPO/481-593; GLEYA domain
7 gi|6319254|ref|NP_009337.1| Protein of unknown function; may interact with ribosomes, based on co-purification experiments; (YAL064W) [Saccharomyces cerevisiae] 108 PfamA30U 15-82 -7.100 16  PF01822.17; A7ERH4_SCLS1/37-114; WSC domain
8 gi|33438755|ref|NP_878039.1| Putative protein of unknown function; identified by expression profiling and mass spectrometry; Yal063c-ap (YAL063C-A) [Saccharomyces cerevisiae] 96 PfamA30U 31-91 -6.620 26  PF13798.4; X2GN24_9BACI/8-168; Protein of unknown function with PCYCGC motif
9 gi|6319255|ref|NP_009338.1|(removed signalp:1-24) Lectin-like protein with similarity to Flo1p, thought to be expressed and involved in flocculation; Flo9p (YAL063C) [Saccharomyces cerevisiae] (Range: 1-500) 500 PfamA30U 12-216 -16.300 11  PF07691.10; Q7SG54_NEUCR/449-597; PA14 domain
113-229 -28.700 18  PF10528.7; YQ39_SCHPO/481-593; GLEYA domain
188-499 -15.300 PF15741.3; U3I1Q0_ANAPL/22-754; Ligand-dependent nuclear receptor-interacting factor 1
10 gi|6319255|ref|NP_009338.1|(removed signalp:1-24) Lectin-like protein with similarity to Flo1p, thought to be expressed and involved in flocculation; Flo9p (YAL063C) [Saccharomyces cerevisiae] (Range: 251-750) 500 PfamA30U 1-412 -12.000 PF17076.3; SBE22_CANGA/1-813; SBE2, cell-wall formation
11 gi|6319255|ref|NP_009338.1|(removed signalp:1-24) Lectin-like protein with similarity to Flo1p, thought to be expressed and involved in flocculation; Flo9p (YAL063C) [Saccharomyces cerevisiae] (Range: 501-1000) 500 PfamA30U 1-276 -12.300 10  PF08549.8; E3Q6J3_COLGM/3-717; Fungal domain of unknown function (DUF1750 topsan)
6-427 -11.900 10  PF17076.3; SBE22_CANGA/1-813; SBE2, cell-wall formation
12 gi|6319255|ref|NP_009338.1|(removed signalp:1-24) Lectin-like protein with similarity to Flo1p, thought to be expressed and involved in flocculation; Flo9p (YAL063C) [Saccharomyces cerevisiae] (Range: 751-1250) 500 PfamA30U 1-265 -12.900 PF08549.8; E3Q6J3_COLGM/3-717; Fungal domain of unknown function (DUF1750 topsan)
98-500 -11.900 11  PF17076.3; SBE22_CANGA/1-813; SBE2, cell-wall formation
13 gi|6319255|ref|NP_009338.1|(removed signalp:1-24) Lectin-like protein with similarity to Flo1p, thought to be expressed and involved in flocculation; Flo9p (YAL063C) [Saccharomyces cerevisiae] (Range: 1001-1298) 298 PfamA30U 2-287 -15.600 PF08549.8; E3Q6J3_COLGM/3-717; Fungal domain of unknown function (DUF1750 topsan)
14 gi|6319256|ref|NP_009339.1| NADP(+)-dependent glutamate dehydrogenase, synthesizes glutamate from ammonia and alpha-ketoglutarate; rate of alpha-ketoglutarate utilization differs from Gdh1p; expression regulated by nitrogen and carbon sources; Gdh3p (YAL062W) [Saccharomyces cerevisiae] 457 PfamA30U 40-168 -47.500 31  PF02812.16; R6WCN3_9CLOT/34-162; Glu/Leu/Phe/Val dehydrogenase, dimerisation domain
185-454 -40.900 32  PF00208.19; Q6H3Y7_ORYSJ/176-408; Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
15 gi|6319257|ref|NP_009340.1| Putative medium-chain alcohol dehydrogenase with similarity to BDH1; transcription induced by constitutively active PDR1 and PDR3; BDH2 is an essential gene; Bdh2p (YAL061W) [Saccharomyces cerevisiae] 417 PfamA30U 26-159 -37.900 36  PF08240.10; A9CHB7_AGRFC/24-130; Alcohol dehydrogenase GroES-like domain
167-387 -40.900 16  PF16912.3; I7BJ28_NATSJ/144-370; Glucose dehydrogenase C-terminus
16 gi|6319258|ref|NP_009341.1| NAD-dependent (R,R)-butanediol dehydrogenase, catalyzes oxidation of (R,R)-2,3-butanediol to (3R)-acetoin, oxidation of meso-butanediol to (3S)-acetoin, and reduction of acetoin; enhances use of 2,3-butanediol as an aerobic carbon source; Bdh1p (YAL060W) [Saccharomyces cerevisiae] 382 PfamA30U 26-159 -37.900 32  PF08240.10; A9CHB7_AGRFC/24-130; Alcohol dehydrogenase GroES-like domain
167-382 -43.000 19  PF16912.3; I7BJ28_NATSJ/144-370; Glucose dehydrogenase C-terminus
17 gi|6319259|ref|NP_009342.1| Protein of unknown function, localized in the nucleoplasm and the nucleolus, genetically interacts with MTR2 in 60S ribosomal protein subunit export; Ecm1p (YAL059W) [Saccharomyces cerevisiae] 212 PfamA30U 31-152 -58.000 52  PF09135.9; Q6CLT8_KLULA/8-125; Alb1
18 gi|6319260|ref|NP_009343.1|(removed signalp:1-19) Calnexin; integral membrane ER chaperone involved in folding and quality control of glycoproteins; chaperone activity is inhibited by Mpd1p, with which Cne1p interacts; 24% identical to mammalian calnexin; Ca+ binding not yet shown in yeast; Cne1p (YAL058W) [Saccharomyces cerevisiae] 483 PfamA30U 14-394 -110.000 32  PF00262.16; R4XC34_TAPDE/40-408; Calreticulin family
19 gi|41629666|ref|NP_009345.2| Multistep regulator of cAMP-PKA signaling; inhibits PKA downstream of Gpa2p and Cyr1p, thereby increasing cAMP dependency; inhibits Ras activity through direct interactions with Ira1p/2p; regulated by G-alpha protein Gpa2p; homolog of Gpb1p; Gpb2p (YAL056W) [Saccharomyces cerevisiae] 880 PfamA30U 691-751 -20.200 18  PF13415.4; D0NJE7_PHYIT/261-311; Galactose oxidase, central domain
20 gi|6319263|ref|NP_009346.1| Putative peroxisomal membrane protein required for import of peroxisomal proteins, functionally complements a Pichia pastoris pex22 mutation; Pex22p (YAL055W) [Saccharomyces cerevisiae] 180 PfamA30U 51-167 -53.800 22  PF12827.5; C4Y073_CLAL4/43-162; Peroxisomal biogenesis protein family


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ye Y, Godzik A. FATCAT: a web server for flexible structure comparison and structure similarity searching. Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W582-5.