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Shows best template from each database, and all templates with significant scores covering different query fragments

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# Query Length Result vs. Range Score %id Covered by template(s)
1 2N4O Entity 1(prereleased) 95 VFDB 17-95 -4.670 17  VFG002320(gi:123442750) (fliB) flagellin lysine-N-methylase [Flagella (VF0394)] [Yersinia enterocolitica subsp. enterocolitica 8081]
2 2N3I Entity 1(prereleased) 94 VFDB 26-84 -5.000 20  VFG002074(gi:15595286) (hsiG1) type VI secretion system hcp secretion island protein HsiG1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
3 2NCS Entity 1(prereleased) 36 VFDB 14-32 -3.560 10  VFG001286(gi:21284316) (icaD) intercellular adhesion protein D, involved in polysaccharide intercellular adhesin(PIA) synthesis [Intercellular adhesion proteins (VF0014)] [Staphylococcus aureus subsp. aureus MW2]
4 2N98 Entity 1(prereleased) 90 VFDB 2-90 -26.400 16  VFG001822(gi:15609518) (mbtD) Polyketide synthetase MbtD (polyketide synthase) [Mycobactin (VF0299)] [Mycobacterium tuberculosis H37Rv]
5 2N2G Entity 1(prereleased) 33 VFDB 2-33 -3.900 12  VFG042520(gi:33469479) (csdA) CS19 fimbrial subunit CsdA [coli surface antigen CS19 (AI032)] [Escherichia coli O114:H- str. WS0115A]
6 2N64 Entity 1(prereleased) 75 VFDB 16-75 -6.220 16  VFG045501(gi:52841161) (ravI) Dot/Icm type IV secretion system effector RavI [Dot/Icm (VF0156)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
7 4S3U Entity 1(prereleased) 360 VFDB 67-334 -5.290 12  VFG002377(gi:123443295) (ddhA) glucose-1-phosphate cytidylyltransferase [O-antigen (VF0392)] [Yersinia enterocolitica subsp. enterocolitica 8081]
8 2N6O Entity 1(prereleased) 35 VFDB 8-24 -2.490 17  VFG002086(gi:15600889) (vasI) type VI secretion system protein VasI [T6SS (VF0335)] [Vibrio cholerae O1 biovar El Tor str. N16961]
9 2NAZ Entity 1(prereleased) 112 VFDB 2-107 -37.500 25  VFG001386(gi:15607897) (phoP) Possible two component system response transcriptional positive regulator PhoP [PhoP (VF0286)] [Mycobacterium tuberculosis H37Rv]
10 3JB5 Entity 1(prereleased) 315 VFDB 5-315 -6.840 10  VFG000975(gi:15675770) (ska) streptokinase A precursor [Streptokinase (VF0247)] [Streptococcus pyogenes M1 GAS]
11 5A6D Entity 1(prereleased) 249 VFDB 6-158 -5.620 VFG000183(gi:15598300) (xcpP) secretion protein XcpP [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
12 5A6Q Entity 1(prereleased) 114 VFDB 2-112 -5.290 16  VFG000890(gi:26249418) (papG) P pilus tip adhesin PapG [P fimbriae (VF0220)] [Escherichia coli CFT073]
13 5A7D Entity 1(prereleased) 382 VFDB 12-382 -50.300 VFG045530(gi:52841882) (lpg1654) Dot/Icm type IV secretion system effector [Dot/Icm (VF0156)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
14 5A7D Entity 2(prereleased) 341 VFDB 107-334 -6.070 10  VFG000389(gi:16082727) (lcrE/yopN) type III secretion system gatekeeper YopN [TTSS (VF0140)] [Yersinia pestis CO92]
15 5A7E Entity 1(prereleased) 496 VFDB 10-470 -5.220 VFG001280(gi:21282246) (sdrD) Ser-Asp rich fibrinogen-binding bone sialoprotein-binding protein [SDr (VF0019)] [Staphylococcus aureus subsp. aureus MW2]
16 5A8C Entity 1(prereleased) 320 VFDB 44-307 -8.360 12  VFG001361(gi:15900059) (pspA) pneumococcal surface protein A [PspA (VF0152)] [Streptococcus pneumoniae TIGR4]
17 5A8F Entity 1(prereleased) 219 VFDB 83-207 -6.880 VFG000420(gi:16082874) (caf1M) putative F1 chaperone protein [F1 antigen (VF0138)] [Yersinia pestis CO92]
18 5A8F Entity 3(prereleased) 258 VFDB 74-255 -4.870 15  VFG041254(gi:52840763) (lpg0518) Dot/Icm type IV secretion system effector [Dot/Icm (SS047)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
19 5A8F Entity 2(prereleased) 189 VFDB 27-99 -5.990 VFG000553(gi:16766198) (invJ) type III secretion system needle length regulator InvJ [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
20 5A8K Entity 1(prereleased) 550 VFDB 39-546 -5.970 13  VFG002033(gi:13507880) (p1/MgPa/gapA) ADP1_MYCPN adhesin P1 [Cytadherence organelle (VF0330)] [Mycoplasma pneumoniae M129]


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ye Y, Godzik A. FATCAT: a web server for flexible structure comparison and structure similarity searching. Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W582-5.