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Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:

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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 51480next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 2N4O Entity 1(prereleased) 95 HGM_OVER 56-88 -4.570 15  PB029229 gi|150007903|ref|YP_001302646.1| hypothetical protein BDI_1263 [Parabacteroides distasonis ATCC 8503]gi|149936327|gb|ABR43024.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503]
2 2N3I Entity 1(prereleased) 94 HGM_OVER 28-94 -3.140 14  PB005346 A0R807_PELPD/1-258 PB005346; Pfam-B_5346;
3 2NCS Entity 1(prereleased) 36 HGM_OVER 5-30 -0.949 19  PB028090 gi|167758043|ref|ZP_02430170.1| hypothetical protein CLOSCI_00381 [Clostridium scindens ATCC 35704]gi|167663940|gb|EDS08070.1| hypothetical protein CLOSCI_00381 [Clostridium scindens ATCC 35704]
4 2N98 Entity 1(prereleased) 90 HGM_OVER 26-84 -4.200 16  HGC00150 gi|162733542|dbj|BAAZ01030454.1|1.0 TMP01074;
5 2N2G Entity 1(prereleased) 33 HGM_OVER 4-22 -1.730 10  HGC01179 gi|162738527|dbj|BAAZ01025469.1|2.0 TMP01658;
6 2N64 Entity 1(prereleased) 75 HGM_OVER 24-74 -5.340 14  PB012472 gi|62259485|gb|AAX77857.1| unknown protein [synthetic construct]
7 4S3U Entity 1(prereleased) 360 HGM_OVER 70-269 -3.060 PB000790 _Gut.Meta.Jp.0111831_ gi|163310496|dbj|BABD01000203.1||3 (- 2591:4589~0 complete)
8 2N6O Entity 1(prereleased) 35 HGM_OVER 5-33 -3.670 20  HGC00947 gi|162844524|dbj|BABA01000185.1|4.0 TMP01280;
9 2NAZ Entity 1(prereleased) 112 HGM_OVER 29-101 -4.190 21  PB005346 A0R807_PELPD/1-258 PB005346; Pfam-B_5346;
10 3JB5 Entity 1(prereleased) 315 HGM_OVER 58-125 -2.610 PB031792 gi|154174791|ref|YP_001409041.1| flavodoxin family protein [Campylobacter curvus 525.92]gi|112804021|gb|EAU01365.1| flavodoxin family protein [Campylobacter curvus 525.92]
11 5A6D Entity 1(prereleased) 249 HGM_OVER 1-224 -3.890 PB048631 gi|160885545|ref|ZP_02066548.1| hypothetical protein BACOVA_03545 [Bacteroides ovatus ATCC 8483]gi|156109167|gb|EDO10912.1| hypothetical protein BACOVA_03545 [Bacteroides ovatus ATCC 8483]
12 5A6Q Entity 1(prereleased) 114 HGM_OVER 86-110 -8.570 28  PB001823 Q5L7Q9_BACFN/1-326 PB001823; Pfam-B_1823;
13 5A7D Entity 1(prereleased) 382 HGM_OVER 43-130 -4.340 16  PB002794 gi|86143885|ref|ZP_01062253.1| hypothetical protein MED217_03525 [Flavobacterium sp. MED217]gi|85829592|gb|EAQ48055.1| hypothetical protein MED217_03525 [Leeuwenhoekiella blandensis MED217]
14 5A7D Entity 2(prereleased) 341 HGM_OVER 135-311 -6.010 PB014998 gi|86133284|ref|ZP_01051866.1| hypothetical protein MED152_01230 [Tenacibaculum sp. MED152]gi|85820147|gb|EAQ41294.1| hypothetical protein MED152_01230 [Polaribacter dokdonensis MED152]
15 5A7E Entity 1(prereleased) 496 HGM_OVER 90-262 -4.120 11  PB002776 gi|157737147|ref|YP_001489830.1| hypothetical protein Abu_0901 [Arcobacter butzleri RM4018]gi|157699001|gb|ABV67161.1| hypothetical protein Abu_0901 [Arcobacter butzleri RM4018]
16 5A8C Entity 1(prereleased) 320 HGM_OVER 30-320 -4.460 PB001708 Q3IRP6_NATPD/1-505 PB001708; Pfam-B_1708;
17 5A8F Entity 1(prereleased) 219 HGM_OVER 12-211 -3.700 10  PB064361 Q64PJ4_BACFR/1-580 PB064361; Pfam-B_64361;
18 5A8F Entity 3(prereleased) 258 HGM_OVER 100-200 -4.120 PB071107 _Gut.Meta.Jp.0066071_ gi|162701604|dbj|BAAY01026246.1||2 (+ 344:749~0 complete)
19 5A8F Entity 2(prereleased) 189 HGM_OVER 70-189 -4.640 PB038401 Q8RFH0_FUSNN/1-210 PB038401; Pfam-B_38401;
20 5A8K Entity 1(prereleased) 550 HGM_OVER 1-190 -3.570 13  HGC00374 gi|162831834|dbj|BABA01012875.1|1.0 TMP00304;


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ye Y, Godzik A. FATCAT: a web server for flexible structure comparison and structure similarity searching. Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W582-5.