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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 2171next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|15675949|ref|NP_273067.1| putative acetyltransferase (NMB0001) [Neisseria meningitidis MC58] 163 PfamA30U 28-162 -29.500 14  PF17013.3; R0MKA5_NOSB1/22-236; Putative acetyl-transferase
2 gi|15675950|ref|NP_273068.1|(removed signalp:1-36) hypothetical protein (NMB0002) [Neisseria meningitidis MC58] 95 PfamA30U 2-95 -33.900 17  PF12777.5; W4YN93_STRPU/627-970; Microtubule-binding stalk of dynein motor
3 gi|15675951|ref|NP_273069.1| glutamyl-tRNA synthetase (NMB0003) [Neisseria meningitidis MC58] 464 PfamA30U 2-321 -41.300 16  PF01921.16; Q5NP46_ZYMMO/15-368; tRNA synthetases class I (K)
4 gi|15675952|ref|NP_273070.1|(removed signalp:1-37) EpiH/GdmH-related protein (NMB0004) [Neisseria meningitidis MC58] 177 PfamA30U 16-141 -37.900 30  PF02698.15; D5CMM5_SIDLE/81-243; DUF218 topsan domain
5 gi|15675953|ref|NP_273071.1| arsenate reductase (NMB0005) [Neisseria meningitidis MC58] 117 PfamA30U 1-107 -41.400 20  PF07955.9; S0E7W5_GIBF5/2-126; Protein of unknown function (DUF1687 topsan)
6 gi|15675954|ref|NP_273072.1|(removed signalp:1-22) thioredoxin-related protein (NMB0006) [Neisseria meningitidis MC58] 138 PfamA30U 1-116 -55.500 19  PF00578.19; B8CZ50_HALOH/40-156; AhpC/TSA family
7 gi|15675955|ref|NP_273073.1| ABC transporter ATP-binding protein (NMB0007) [Neisseria meningitidis MC58] 216 PfamA30U 18-166 -40.400 28  PF00005.25; YTFR_ECOLI/25-174; ABC transporter
23-216 -14.700 PF10443.7; C8VEZ9_EMENI/373-791; RNA12 protein
8 gi|15675956|ref|NP_273074.1| putative cell division protein FtsX (NMB0008) [Neisseria meningitidis MC58] 305 PfamA30U 179-298 -60.700 31  PF02687.19; A8AR20_CITK8/231-351; FtsX-like permease family
9 gi|15675957|ref|NP_273075.1| BolA/YrbA family protein (NMB0009) [Neisseria meningitidis MC58] 82 PfamA30U 11-76 -32.700 39  PF01722.16; G4T8V3_PIRID/11-92; BolA-like protein
10 gi|15675958|ref|NP_273076.1| phosphoglycerate kinase (NMB0010) [Neisseria meningitidis MC58] 403 PfamA30U 10-390 -108.000 45  PF00162.17; K9V4L4_9CYAN/12-388; Phosphoglycerate kinase
11 gi|15675959|ref|NP_273077.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase (NMB0011) [Neisseria meningitidis MC58] 417 PfamA30U 6-405 -118.000 59  PF00275.18; MURA_ECOLI/6-406; EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
12 gi|15675960|ref|NP_273078.1| hypothetical protein (NMB0012) [Neisseria meningitidis MC58] 323 PfamA30U 84-321 -21.700 19  PF04332.13; Q9RSA1_DEIRA/56-346; Protein of unknown function (DUF475 topsan)
85-286 -103.000 51  PF03741.14; Q8EG61_SHEON/77-283; Integral membrane protein TerC family
13 gi|15675961|ref|NP_273079.1| hypothetical protein (NMB0013) [Neisseria meningitidis MC58] 149 PfamA30U 1-143 -18.700 PF03653.11; Q9A210_CAUCR/4-152; Uncharacterised protein family (UPF0093 topsan)
47-146 -26.600 18  PF05425.11; Q1QFL4_NITHX/201-307; Copper resistance protein D
14 gi|15675962|ref|NP_273080.1| 3-deoxy-D-manno-octulosonic-acid transferase (NMB0014) [Neisseria meningitidis MC58] 423 PfamA30U 33-208 -78.100 40  PF04413.14; B3PCK7_CELJU/37-215; 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase)
51-418 -11.500 13  PF04007.10; O26874_METTH/16-355; Protein of unknown function (DUF354 topsan)
219-398 -12.600 18  PF00534.18; BSHA_BACSU/185-352; Glycosyl transferases group 1
15 gi|15675963|ref|NP_273081.1| 6-phosphogluconate dehydrogenase (NMB0015) [Neisseria meningitidis MC58] 482 PfamA30U 4-174 -71.500 51  PF03446.13; Q8FTI1_COREF/15-184; NAD binding domain of 6-phosphogluconate dehydrogenase
179-468 -103.000 51  PF00393.17; K8GH81_9CYAN/178-467; 6-phosphogluconate dehydrogenase, C-terminal domain
16 gi|15675964|ref|NP_273082.1| hypothetical protein (NMB0016) [Neisseria meningitidis MC58] 78 PfamA30U 7-48 -6.410 23  PF04020.11; R4PXK2_9BACT/2-110; Mycobacterial 4 TMS phage holin, superfamily IV
17 gi|15675965|ref|NP_273083.1| UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (NMB0017) [Neisseria meningitidis MC58] 307 PfamA30U 3-278 -115.000 57  PF03331.11; D5CP16_SIDLE/4-276; UDP-3-O-acyl N-acetylglycosamine deacetylase
18 gi|15675966|ref|NP_273084.1|(removed signalp:1-27) pilin PilE (NMB0018) [Neisseria meningitidis MC58] 143 PfamA30U 9-136 -31.800 16  PF00114.17; Q60163_MORBO/35-157; Pilin (bacterial filament)
19 gi|77358699|ref|YP_338284.1| pilS cassette (NMB0019) [Neisseria meningitidis MC58] 136 PfamA30U 2-116 -25.800 19  PF00114.17; Q60163_MORBO/35-157; Pilin (bacterial filament)
20 gi|77358700|ref|YP_338285.1| pilS cassette (NMB0020) [Neisseria meningitidis MC58] 124 PfamA30U 2-116 -26.100 16  PF00114.17; Q60163_MORBO/35-157; Pilin (bacterial filament)


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ye Y, Godzik A. FATCAT: a web server for flexible structure comparison and structure similarity searching. Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W582-5.