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# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|15607143|ref|NP_214515.1| chromosomal replication initiation protein (Rv0001) [Mycobacterium tuberculosis H37Rv] 507 COG0516 8-503 -114.000 34  [L] COG0593 ATPase involved in DNA replication initiation
2 gi|15607144|ref|NP_214516.1| DNA polymerase III subunit beta (Rv0002) [Mycobacterium tuberculosis H37Rv] 402 COG0516 13-402 -89.200 24  [L] COG0592 DNA polymerase sliding clamp subunit (PCNA homolog)
3 gi|15607145|ref|NP_214517.1| recombination protein F (Rv0003) [Mycobacterium tuberculosis H37Rv] 385 COG0516 1-379 -99.800 24  [L] COG1195 Recombinational DNA repair ATPase (RecF pathway)
4 gi|15607146|ref|NP_214518.1| hypothetical protein (Rv0004) [Mycobacterium tuberculosis H37Rv] 187 COG0516 1-187 -92.000 70  [R] COG5512 Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives
5 gi|15607147|ref|NP_214519.1| DNA gyrase subunit B (Rv0005) [Mycobacterium tuberculosis H37Rv] 714 COG0516 44-714 -160.000 49  [L] COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit
6 gi|15607148|ref|NP_214520.1| DNA gyrase subunit A (Rv0006) [Mycobacterium tuberculosis H37Rv] 838 COG0516 10-826 -207.000 42  [L] COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit
7 gi|15607149|ref|NP_214521.1| hypothetical protein (Rv0007) [Mycobacterium tuberculosis H37Rv] 304 COG0516 1-304 -14.100 11  [K] KOG3915 Transcription regulator dachshund, contains SKI/SNO domain
8 gi|15607150|ref|NP_214522.1| hypothetical protein (Rv0008c) [Mycobacterium tuberculosis H37Rv] 145 COG0516 7-129 -5.970 22  [S] COG4732 Predicted membrane protein
9 gi|15607151|ref|NP_214523.1| iron-regulated peptidyl-prolyl cis-trans isomerase A (Rv0009) [Mycobacterium tuberculosis H37Rv] 182 COG0516 1-182 -85.300 45  [O] KOG0881 Cyclophilin type peptidyl-prolyl cis-trans isomerase
10 gi|15607152|ref|NP_214524.1| hypothetical protein (Rv0010c) [Mycobacterium tuberculosis H37Rv] 141 COG0516 17-113 -7.540 17  [S] COG4811 Predicted membrane protein
11 gi|15607153|ref|NP_214525.1| putative septation inhibitor protein (Rv0011c) [Mycobacterium tuberculosis H37Rv] 93 COG0516 1-54 -9.460 14  [R] KOG0231 Junctional membrane complex protein Junctophilin and related MORN repeat proteins
12 gi|15607154|ref|NP_214526.1| hypothetical protein (Rv0012) [Mycobacterium tuberculosis H37Rv] 262 COG0516 18-250 -74.700 20  [S] COG3879 Uncharacterized protein conserved in bacteria
13 gi|57116682|ref|YP_177615.1| para-aminobenzoate synthase component II (Rv0013) [Mycobacterium tuberculosis H37Rv] 232 COG0516 1-232 -59.100 33  [J] KOG1224 Para-aminobenzoate (PABA) synthase ABZ1
2-191 -106.000 50  [EH] COG0512 Anthranilate/para-aminobenzoate synthases component II
14 gi|15607156|ref|NP_214528.1| transmembrane serine/threonine-protein kinase B PKNB (protein kinase B) (STPK B) (Rv0014c) [Mycobacterium tuberculosis H37Rv] 626 COG0516 1-328 -84.500 35  [RTKL] COG0515 Serine/threonine protein kinase
429-626 -49.100 84  [S] COG2815 Uncharacterized protein conserved in bacteria
15 gi|15607157|ref|NP_214529.1| transmembrane serine/threonine-protein kinase A PKNA (protein kinase A) (STPK A) (Rv0015c) [Mycobacterium tuberculosis H37Rv] 431 COG0516 4-338 -99.100 29  [RTKL] COG0515 Serine/threonine protein kinase
9-417 -38.000 17  [T] KOG0607 MAP kinase-interacting kinase and related serine/threonine protein kinases
16 gi|15607158|ref|NP_214530.1|(removed signalp:1-30) penicillin-binding protein PbpA (Rv0016c) [Mycobacterium tuberculosis H37Rv] 461 COG0516 41-460 -60.000 25  [M] COG0768 Cell division protein FtsI/penicillin-binding protein 2
17 gi|15607159|ref|NP_214531.1|(removed signalp:1-35) cell division protein RodA (Rv0017c) [Mycobacterium tuberculosis H37Rv] 434 COG0516 41-410 -49.200 26  [D] COG0772 Bacterial cell division membrane protein
18 gi|15607160|ref|NP_214532.1| serine/threonine phosphatase (Rv0018c) [Mycobacterium tuberculosis H37Rv] 514 COG0516 1-247 -53.400 29  [T] COG0631 Serine/threonine protein phosphatase
19 gi|15607161|ref|NP_214533.1| hypothetical protein (Rv0019c) [Mycobacterium tuberculosis H37Rv] 155 COG0516 41-155 -34.600 24  [T] COG1716 FOG: FHA domain
20 gi|15607162|ref|NP_214534.1| hypothetical protein (Rv0020c) [Mycobacterium tuberculosis H37Rv] 527 COG0516 23-434 -19.100 [R] KOG2350 Zn-finger protein joined to JAZF1 (predicted suppressor)
181-527 -20.600 13  [T] KOG1882 Transcriptional regulator SNIP1, contains FHA domain
281-518 -26.700 12  [T] KOG3872 FOG: FHA domain
413-524 -30.800 20  [T] COG1716 FOG: FHA domain

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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ye Y, Godzik A. FATCAT: a web server for flexible structure comparison and structure similarity searching. Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W582-5.