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# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|13507740|ref|NP_109689.1| DNA polymerase III beta subunit MPN001 [Mycoplasma pneumoniae M129] 380 PDB0516 1-380 -91.400 19  2avt_A mol:protein length:378 DNA polymerase III beta subunit
2 gi|13507741|ref|NP_109690.1| DnaJ domain-containing protein MPN002 [Mycoplasma pneumoniae M129] 309 PDB0516 2-298 -78.200 18  3lz8_A mol:protein length:329 Putative chaperone DnaJ
3 gi|13507742|ref|NP_109691.1| DNA gyrase subunit B MPN003 [Mycoplasma pneumoniae M129] 650 PDB0516 2-649 -191.000 46  4juo_C mol:protein length:670 DNA topoisomerase 4 subunit B
4 gi|13507743|ref|NP_109692.1| DNA gyrase subunit A MPN004 [Mycoplasma pneumoniae M129] 839 PDB0516 12-512 -149.000 52  4ddq_A mol:protein length:502 DNA gyrase subunit A
42-745 -130.000 33  1zvu_A mol:protein length:716 Topoisomerase IV subunit A
512-835 -68.200 31  3uc1_A mol:protein length:327 DNA gyrase subunit A
5 gi|13507744|ref|NP_109693.1| seryl-tRNA synthetase MPN005 [Mycoplasma pneumoniae M129] 420 PDB0516 1-420 -137.000 43  2dq3_A mol:protein length:425 Seryl-tRNA synthetase
6 gi|13507745|ref|NP_109694.1| thymidylate kinase MPN006 [Mycoplasma pneumoniae M129] 210 PDB0516 1-208 -90.200 27  2ccg_A mol:protein length:225 THYMIDYLATE KINASE
7 gi|13507746|ref|NP_109695.1| DNA polymerase III subunit delta' MPN007 [Mycoplasma pneumoniae M129] 253 PDB0516 2-204 -71.500 20  1njf_A mol:protein length:250 DNA polymerase III subunit gamma
2-252 -65.100 18  3glf_B mol:protein length:395 DNA polymerase III subunit tau
8 gi|13507747|ref|NP_109696.1| tRNA modification GTPase TrmE MPN008 [Mycoplasma pneumoniae M129] 442 PDB0516 1-442 -129.000 27  3gee_A mol:protein length:476 tRNA modification GTPase mnmE
9 gi|13507748|ref|NP_109697.1| hydrolase MPN009 [Mycoplasma pneumoniae M129] 261 PDB0516 2-261 -105.000 30  2gzx_A mol:protein length:265 putative TatD related DNase
10 gi|13507749|ref|NP_109698.1| hypothetical protein MPN010 [Mycoplasma pneumoniae M129] 131 PDB0516 46-130 -31.400 100  2ba2_A mol:protein length:85 Hypothetical UPF0134 protein MPN010
11 gi|13507750|ref|NP_109699.1|(removed signal:1-26) hypothetical protein MPN011 [Mycoplasma pneumoniae M129] 205 PDB0516 1-58 -6.590 17  1wjt_A mol:protein length:103 Transcription elongation factor S-II protein
12 gi|13507751|ref|NP_109700.1|(removed signal:1-21) hypothetical protein MPN012 [Mycoplasma pneumoniae M129] 214 PDB0516 17-74 -6.490 15  2rf0_A mol:protein length:89 Mitogen-activated protein kinase kinase kinas
13 gi|13507752|ref|NP_109701.1| hypothetical protein MPN013 [Mycoplasma pneumoniae M129] 257 PDB0516 2-117 -17.300 4cwu_T mol:protein length:368 CORE-CAPSID BRIDGING PROTEIN
43-124 -26.000 25  1wck_A mol:protein length:220 BCLA PROTEIN
44-158 -24.000 12  4hsi_A mol:protein length:703 Envelope glycoprotein B
164-257 -13.300 14  3u59_A mol:protein length:101 Tropomyosin beta chain
14 gi|13507753|ref|NP_109702.1| hypothetical protein MPN014 [Mycoplasma pneumoniae M129] 212 PDB0516 2-211 -75.800 21  4e2k_A mol:protein length:329 DNA primase
15 gi|13507754|ref|NP_109703.1| hypothetical protein MPN015 [Mycoplasma pneumoniae M129] 285 PDB0516 9-277 -70.900 16  3vpb_A mol:protein length:282 Putative acetylornithine deacetylase
16 gi|13507755|ref|NP_109704.1| ribosomal S6 modification protein MPN016 [Mycoplasma pneumoniae M129] 288 PDB0516 8-288 -74.900 23  4iwx_A mol:protein length:320 Ribosomal protein S6 modification protein
17 gi|13507756|ref|NP_109705.1| 5,10-methylene-tetrahydrofolate dehydrogenase MPN017 [Mycoplasma pneumoniae M129] 269 PDB0516 2-267 -114.000 29  3p2o_A mol:protein length:285 Bifunctional protein folD
18 gi|13507757|ref|NP_109706.1|(removed signal:1-25) transport ATP-binding protein MPN018 [Mycoplasma pneumoniae M129] 598 PDB0516 1-596 -141.000 31  4q4j_A mol:protein length:587 ABC transporter
19 gi|13507758|ref|NP_109707.1| transport ATP-binding protein MPN019 [Mycoplasma pneumoniae M129] 634 PDB0516 17-634 -164.000 32  3qf4_B mol:protein length:598 Uncharacterized ABC transporter ATP-binding p
20 gi|13507759|ref|NP_109708.1| helicases MPN020 [Mycoplasma pneumoniae M129] 1030 PDB0516 282-1023 -10.700 5flm_A mol:protein length:1970 DNA-DIRECTED RNA POLYMERASE
386-1011 -14.600 13  4xqk_A mol:protein length:1578 LlaBIII
455-1030 -39.000 14  4s20_K mol:protein length:974 RNA polymerase-associated protein RapA
555-1030 -86.600 36  1z63_A mol:protein length:500 Helicase of the snf2/rad54 family


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ye Y, Godzik A. FATCAT: a web server for flexible structure comparison and structure similarity searching. Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W582-5.