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Shows best template from each database, and all templates with significant scores covering different query fragments

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# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|13507740|ref|NP_109689.1| DNA polymerase III beta subunit MPN001 [Mycoplasma pneumoniae M129] 380 JCSG0516 1-380 -91.200 19  XB5465A NP_344555.1 358603 PDB-2005-08-31
2 gi|13507741|ref|NP_109690.1| DnaJ domain-containing protein MPN002 [Mycoplasma pneumoniae M129] 309 JCSG0516 2-307 -98.700 19  TM0849 TM0849 282719 Selected-2001-10-12
3 gi|13507742|ref|NP_109691.1| DNA gyrase subunit B MPN003 [Mycoplasma pneumoniae M129] 650 JCSG0516 8-650 -198.000 48  TM0833 TM0833 282703 Purified-2005-04-05
4 gi|13507743|ref|NP_109692.1| DNA gyrase subunit A MPN004 [Mycoplasma pneumoniae M129] 839 JCSG0516 17-817 -206.000 40  TM1084 TM1084 282951 Purified-2001-04-24
5 gi|13507744|ref|NP_109693.1| seryl-tRNA synthetase MPN005 [Mycoplasma pneumoniae M129] 420 JCSG0516 1-416 -136.000 42  TM1379 TM1379 283240 Crystal|NMR-2004-06-10
6 gi|13507745|ref|NP_109694.1| thymidylate kinase MPN006 [Mycoplasma pneumoniae M129] 210 JCSG0516 5-207 -84.700 33  TM1099 TM1099 282965 Purified-2003-11-26
7 gi|13507746|ref|NP_109695.1| DNA polymerase III subunit delta' MPN007 [Mycoplasma pneumoniae M129] 253 JCSG0516 2-253 -81.000 16  TM0686 TM0686 282556 Purified-2001-02-28
8 gi|13507747|ref|NP_109696.1| tRNA modification GTPase TrmE MPN008 [Mycoplasma pneumoniae M129] 442 JCSG0516 26-427 -24.600 13  TT0527A YP_322606.1 404770 Selected-2009-08-14
220-362 -26.200 23  MJ12771A YP_137184.1 403034 Purified-2009-10-17
9 gi|13507748|ref|NP_109697.1| hydrolase MPN009 [Mycoplasma pneumoniae M129] 261 JCSG0516 3-261 -106.000 29  TM0667 TM0667 282539 PDB-2002-07-09
10 gi|13507749|ref|NP_109698.1| hypothetical protein MPN010 [Mycoplasma pneumoniae M129] 131 JCSG0516 69-131 -7.460 11  SP19108A NP_250641.1 413313 Selected-2009-11-12
11 gi|13507750|ref|NP_109699.1|(removed signal:1-26) hypothetical protein MPN011 [Mycoplasma pneumoniae M129] 205 JCSG0516 2-71 -7.380 SP18739A ZP_02031627.1 413035 Purified-2012-12-06
12 gi|13507751|ref|NP_109700.1|(removed signal:1-21) hypothetical protein MPN012 [Mycoplasma pneumoniae M129] 214 JCSG0516 6-75 -7.870 SP18739A ZP_02031627.1 413035 Purified-2012-12-06
13 gi|13507752|ref|NP_109701.1| hypothetical protein MPN013 [Mycoplasma pneumoniae M129] 257 JCSG0516 27-145 -25.200 11  SP2003J ZP_02995359.1 410412 Selected-2009-11-12
42-115 -40.500 18  SP17784A ZP_02421200.1 411248 Crystal|NMR-2013-05-16
51-257 -22.000 15  SP16877B YP_001303840.1 412644 Selected-2009-11-12
14 gi|13507753|ref|NP_109702.1| hypothetical protein MPN014 [Mycoplasma pneumoniae M129] 212 JCSG0516 2-210 -66.300 23  TM1452 TM1452 283310 Selected-2001-10-12
15 gi|13507754|ref|NP_109703.1| hypothetical protein MPN015 [Mycoplasma pneumoniae M129] 285 JCSG0516 9-284 -67.500 18  PU9803J YP_001095162.1 381332 Crystal|NMR-2007-12-14
16 gi|13507755|ref|NP_109704.1| ribosomal S6 modification protein MPN016 [Mycoplasma pneumoniae M129] 288 JCSG0516 8-288 -72.900 21  PU9803C NP_873685.1 381379 Purified-2007-10-11
17 gi|13507756|ref|NP_109705.1| 5,10-methylene-tetrahydrofolate dehydrogenase MPN017 [Mycoplasma pneumoniae M129] 269 JCSG0516 1-267 -103.000 28  TM1767 TM1767 283621 Purified-2001-12-11
18 gi|13507757|ref|NP_109706.1|(removed signal:1-25) transport ATP-binding protein MPN018 [Mycoplasma pneumoniae M129] 598 JCSG0516 1-596 -140.000 31  TM0287 TM0287 282163 Purified-2001-02-27
19 gi|13507758|ref|NP_109707.1| transport ATP-binding protein MPN019 [Mycoplasma pneumoniae M129] 634 JCSG0516 17-634 -164.000 32  TM0288 TM0288 282164 Purified-2001-02-27
20 gi|13507759|ref|NP_109708.1| helicases MPN020 [Mycoplasma pneumoniae M129] 1030 JCSG0516 380-1030 -65.200 22  WT2414A.SMARCA2 BC075641 422830 Purified-2011-06-03
469-1030 -81.900 28  RF2414A.SMARCA5 BC023144 421183 Cloned-2010-11-18
568-1030 -89.600 32  RF3866A.HELLS BC100394 421236 Purified-2011-02-13


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ye Y, Godzik A. FATCAT: a web server for flexible structure comparison and structure similarity searching. Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W582-5.