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Shows best template from each database, and all templates with significant scores covering different query fragments

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# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|13507740|ref|NP_109689.1| DNA polymerase III beta subunit MPN001 [Mycoplasma pneumoniae M129] 380 COG0516 1-380 -82.600 20  [L] COG0592 DNA polymerase sliding clamp subunit (PCNA homolog)
2 gi|13507741|ref|NP_109690.1| DnaJ domain-containing protein MPN002 [Mycoplasma pneumoniae M129] 309 COG0516 2-309 -85.700 18  [O] COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain
3 gi|13507742|ref|NP_109691.1| DNA gyrase subunit B MPN003 [Mycoplasma pneumoniae M129] 650 COG0516 3-650 -156.000 47  [L] COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit
4 gi|13507743|ref|NP_109692.1| DNA gyrase subunit A MPN004 [Mycoplasma pneumoniae M129] 839 COG0516 16-836 -212.000 38  [L] COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit
5 gi|13507744|ref|NP_109693.1| seryl-tRNA synthetase MPN005 [Mycoplasma pneumoniae M129] 420 COG0516 1-418 -134.000 43  [J] COG0172 Seryl-tRNA synthetase
6 gi|13507745|ref|NP_109694.1| thymidylate kinase MPN006 [Mycoplasma pneumoniae M129] 210 COG0516 3-207 -91.100 32  [F] COG0125 Thymidylate kinase
7 gi|13507746|ref|NP_109695.1| DNA polymerase III subunit delta' MPN007 [Mycoplasma pneumoniae M129] 253 COG0516 2-253 -78.600 19  [L] COG2812 DNA polymerase III, gamma/tau subunits
8 gi|13507747|ref|NP_109696.1| tRNA modification GTPase TrmE MPN008 [Mycoplasma pneumoniae M129] 442 COG0516 1-442 -111.000 28  [R] COG0486 Predicted GTPase
9 gi|13507748|ref|NP_109697.1| hydrolase MPN009 [Mycoplasma pneumoniae M129] 261 COG0516 1-261 -105.000 26  [L] COG0084 Mg-dependent DNase
10 gi|13507749|ref|NP_109698.1| hypothetical protein MPN010 [Mycoplasma pneumoniae M129] 131 COG0516 51-126 -6.640 10  [S] COG5374 Uncharacterized conserved protein
11 gi|13507750|ref|NP_109699.1|(removed signal:1-26) hypothetical protein MPN011 [Mycoplasma pneumoniae M129] 205 COG0516 16-94 -4.590 11  [S] COG5399 Uncharacterized protein conserved in archaea
12 gi|13507751|ref|NP_109700.1|(removed signal:1-21) hypothetical protein MPN012 [Mycoplasma pneumoniae M129] 214 COG0516 3-109 -4.810 14  [R] KOG4357 Uncharacterized conserved protein (involved in mesoderm differentiation in humans)
13 gi|13507752|ref|NP_109701.1| hypothetical protein MPN013 [Mycoplasma pneumoniae M129] 257 COG0516 2-127 -12.200 13  [R] KOG2350 Zn-finger protein joined to JAZF1 (predicted suppressor)
42-120 -12.500 16  [W] KOG3544 Collagens (type IV and type XIII), and related proteins
143-257 -12.500 15  [S] COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain
14 gi|13507753|ref|NP_109702.1| hypothetical protein MPN014 [Mycoplasma pneumoniae M129] 212 COG0516 2-210 -61.700 18  [L] COG0358 DNA primase (bacterial type)
15 gi|13507754|ref|NP_109703.1| hypothetical protein MPN015 [Mycoplasma pneumoniae M129] 285 COG0516 1-280 -29.500 16  [HJ] COG0189 Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase)
16 gi|13507755|ref|NP_109704.1| ribosomal S6 modification protein MPN016 [Mycoplasma pneumoniae M129] 288 COG0516 1-288 -29.100 20  [HJ] COG0189 Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase)
17 gi|13507756|ref|NP_109705.1| 5,10-methylene-tetrahydrofolate dehydrogenase MPN017 [Mycoplasma pneumoniae M129] 269 COG0516 2-266 -110.000 29  [H] COG0190 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase
18 gi|13507757|ref|NP_109706.1|(removed signal:1-25) transport ATP-binding protein MPN018 [Mycoplasma pneumoniae M129] 598 COG0516 2-598 -88.100 24  [U] KOG0058 Peptide exporter, ABC superfamily
48-590 -90.900 25  [V] COG1132 ABC-type multidrug transport system, ATPase and permease components
19 gi|13507758|ref|NP_109707.1| transport ATP-binding protein MPN019 [Mycoplasma pneumoniae M129] 634 COG0516 28-634 -106.000 28  [V] COG1132 ABC-type multidrug transport system, ATPase and permease components
20 gi|13507759|ref|NP_109708.1| helicases MPN020 [Mycoplasma pneumoniae M129] 1030 COG0516 1-1030 -168.000 22  [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ye Y, Godzik A. FATCAT: a web server for flexible structure comparison and structure similarity searching. Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W582-5.