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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 19629next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 CE21227 CE21227 1315 PDB-2004-06-11 525 VFDB 60-438 -4.810 VFG001283(gi:21284150) (fnbA) fibronectin-binding protein A [FnBPs (VF0010)] [Staphylococcus aureus subsp. aureus MW2]
2 TM0001 TM0001 281882 Purified-2001-08-24 41 VFDB 4-40 -2.710 25  VFG000068(gi:16802250) (actA) actin-assembly inducing protein precursor [ActA (VF0066)] [Listeria monocytogenes EGD-e]
3 TM0002 TM0002 281883 Purified-2001-08-29 41 VFDB 7-36 -2.610 20  VFG001009(gi:31983791) (spa13) type III secretion system stalk protein Spa13 [TTSS (VF0118)] [Shigella flexneri 2a str. 301]
4 TM0003 TM0003 281884 Purified-2001-12-06 40 VFDB 2-40 -1.700 25  VFG042553(gi:209921907) (faeE) fimbrial chaperone FaeE [K88 pili/F4 fimbriae (AI040)] [Escherichia coli SE11]
5 TM0004 TM0004 281885 Purified-2004-07-19 31 VFDB 1-29 -3.060 31  VFG032965(gi:16802482) (lntA) listeria nuclear targeted protein A [LntA (VF0440)] [Listeria monocytogenes EGD-e]
6 TM0005 TM0005 281886 Purified-2001-01-30 650 VFDB 549-647 -8.150 15  VFG013357(gi:30995407) (orfE) lipopolysaccharide biosynthesis protein [LOS (CVF494)] [Haemophilus influenzae Rd KW20]
7 TM0006 TM0006 281887 Diffraction|HSQC-2004-07-13 345 VFDB 8-305 -4.400 13  VFG041307(gi:52842182) (pieC/lirE) Dot/Icm type IV secretion system effector PieC/LirE [Dot/Icm (SS047)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
8 TM0007 TM0007 281888 Purified-2004-07-19 438 VFDB 263-363 -8.830 13  VFG041245(gi:52840540) (lem2) Dot/Icm type IV secretion system effector Lem2 [Dot/Icm (SS047)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
9 TM0008 TM0008 281889 Crystal|NMR-2001-04-01 224 VFDB 130-224 -4.580 VFG000800(gi:15804217) (espA) Type III secretion system translocator protein EspA [EspA (VF0198)] [Escherichia coli O157:H7 str. EDL933]
10 TM0009 TM0009 281890 Purified-2001-02-14 142 VFDB 4-142 -5.310 13  VFG012788(gi:31983554) (ospD1) type III secretion system effector OspD1 [T3SS (SS011)] [Shigella flexneri 2a str. 301]
11 TM0010 TM0010 281891 Purified-2005-03-03 607 VFDB 78-523 -6.390 15  VFG000029(gi:33591342) (bplL) lipopolysaccharide biosynthesis protein [LPS (VF0033)] [Bordetella pertussis Tohama I]
12 TM0011 TM0011 281892 Purified-2004-02-02 128 VFDB 3-74 -6.470 VFG042428(gi:2196861) (afaE-II) afimbrial adhesin AfaE-II protein [Afimbrial adhesin, AFA-II, chloramphenicol-resistant adhesin (AI011)] [Escherichia coli str. A22]
13 TM0012 TM0012 281893 Purified-2001-08-29 176 VFDB 108-175 -6.670 16  VFG021800(gi:15608484) (mbtL) Acyl carrier protein (ACP) MbtL [mycobactin (IA031)] [Mycobacterium tuberculosis H37Rv]
14 TM0013 TM0013 281894 Purified-2001-08-24 253 VFDB 37-213 -5.790 10  VFG001232(gi:15595611) (chpB) probable methylesterase [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
15 TM0014 TM0014 281895 Purified-2001-01-30 278 VFDB 4-277 -44.300 19  VFG043367(gi:15644733) (tlpB) membrane-bound chemoreceptor sensing pH and autoinducer-2 [Pse5Ac7Ac (AI150)] [Helicobacter pylori 26695]
21-245 -45.500 22  VFG043378(gi:15645224) (cheV3) chemotaxis coupling protein CheV3 [Pse5Ac7Ac (AI150)] [Helicobacter pylori 26695]
16 TM0015 TM0015 281896 PDB-2007-09-14 192 VFDB 2-164 -5.940 13  VFG000682(gi:6470209) (capB) CapB, involved in Poly-gamma-glutamate synthesis [Capsule (VF0141)] [Bacillus anthracis]
17 TM0016 TM0016 281897 Purified-2001-08-24 101 VFDB 56-95 -5.350 VFG000136(gi:15595962) (mucC) negative regulator for alginate biosynthesis MucB [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
18 TM0017 TM0017 281898 Purified-2003-03-05 394 VFDB 16-381 -4.480 VFG000310(gi:15644954) (neuA/flmD) CMP-N-acetylneuraminic acid synthetase [Lewis antigen (VF0057)] [Helicobacter pylori 26695]
19 TM0018 TM0018 281899 Purified-2001-08-24 324 VFDB 41-194 -5.420 14  VFG000915(gi:26247119) (focH) F1C Putative fimbrial adhesin precursor [F1C fimbriae (VF0224)] [Escherichia coli CFT073]
20 TM0019 TM0019 281900 Crystal|NMR-2004-03-31 256 VFDB 1-250 -80.300 23  VFG001922(gi:15792655) (ptmA) flagellin modification protein A [Flagella (VF0114)] [Campylobacter jejuni subsp. jejuni NCTC 11168]


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ye Y, Godzik A. FATCAT: a web server for flexible structure comparison and structure similarity searching. Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W582-5.