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Shows best template from each database, and all templates with significant scores covering different query fragments

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# Query Length Result vs. Range Score %id Covered by template(s)
1 HGC00024 gi|162813637|dbj|BABA01031072.1|2.0 TMP01508; 217 PfamA30U 29-217 -45.200 17  PF14322.4; R6MDM1_9BACE/22-224; Starch-binding associating with outer membrane
2 HGC00044 gi|162658718|dbj|BAAX01000887.1|1.0 TMP00920; 360 PfamA30U 61-147 -9.800 PF05753.12; Q9VUZ0_DROME/9-186; Translocon-associated protein beta (TRAPB)
91-171 -14.300 22  PF14310.4; Q2TYS6_ASPOR/716-785; Fibronectin type III-like domain
3 HGC00106 gi|162841414|dbj|BABA01003295.1|1.0 TMP01000; 81 PfamA30U 1-65 -7.980 PF07055.10; C6CTR2_PAESJ/323-385; Enoyl reductase FAD binding domain
4 HGC00150 gi|162733542|dbj|BAAZ01030454.1|1.0 TMP01074; 227 PfamA30U 1-125 -7.220 PF00447.15; U5GYQ9_USTV1/99-205; HSF-type DNA-binding
5 HGC00164 gi|163636082|dbj|BABG01000191.1|4.0 TMP00833; 173 PfamA30U 6-120 -18.200 22  PF13657.4; A8G984_SERP5/4-104; HipA N-terminal domain
6 HGC00166 gi|163579340|dbj|BABE01005762.1|1.0 TMP00473; 223 PfamA30U 5-91 -16.400 PF17194.2; K9SQ68_9CYAN/5-97; Transcriptional regulator, AbiEi antitoxin N-terminal domain
69-192 -13.200 15  PF09407.8; B9M298_GEODF/67-209; AbiEi antitoxin C-terminal domain
7 HGC00248 gi|162576253|dbj|BAAV01029229.1|2.0 TMP00024; 121 PfamA30U 93-121 -6.500 PF11078.6; E0VMZ7_PEDHC/97-177; Optomotor-blind protein N-terminal region
8 HGC00267 gi|163310129|dbj|BABD01000566.1|6.0 TMP00066; 164 PfamA30U 16-106 -56.700 52  PF12957.5; R6MF37_9FIRM/540-630; Domain of unknown function (DUF3846 topsan)
9 HGC00311 gi|163635536|dbj|BABG01000737.1|2.0 TMP00178; 122 PfamA30U 6-89 -39.500 34  PF12958.5; D4JA63_9FIRM/5-85; Protein of unknown function (DUF3847 topsan)
10 HGC00374 gi|162831834|dbj|BABA01012875.1|1.0 TMP00304; 200 PfamA30U 1-183 -90.900 41  PF13310.4; I3YIZ9_ALIFI/189-446; Virulence protein RhuM family
11 HGC00422 gi|163631722|dbj|BABG01004545.1|2.0 TMP00397; 274 PfamA30U 8-102 -21.600 28  PF12959.5; R5RLB6_9FIRM/10-104; Protein of unknown function (DUF3848 topsan)
113-235 -72.100 40  PF12960.5; L0F7B8_DESDL/8-136; Protein of unknown function (DUF3849 topsan)
12 HGC00429 gi|162734516|dbj|BAAZ01029480.1|1.0 TMP00411; 255 PfamA30U 138-248 -7.300 15  PF10278.7; A7RLX2_NEMVE/18-205; Mediator of RNA pol II transcription subunit 19
13 HGC00485 gi|163636056|dbj|BABG01000217.1|3.0 TMP00523; 127 PfamA30U 3-127 -91.900 61  PF12962.5; R5QVW0_9FIRM/1-126; Protein of unknown function (DUF3851 topsan)
14 HGC00509 gi|162658693|dbj|BAAX01000912.1|3.0 TMP00561; 136 PfamA30U 43-116 -19.800 27  PF12958.5; D4JA63_9FIRM/5-85; Protein of unknown function (DUF3847 topsan)
15 HGC00518 gi|162728471|dbj|BAAY01000490.1|2.0 TMP00574; 92 PfamA30U 1-84 -28.500 21  PF15919.3; E1VAV2_HALED/3-129; HicB_like antitoxin of bacterial toxin-antitoxin system
16 HGC00522 gi|163636101|dbj|BABG01000172.1|3.0 TMP00580; 203 PfamA30U 27-177 -13.200 12  PF14091.4; B0C3V0_ACAM1/8-156; Domain of unknown function (DUF4269 topsan)
17 HGC00552 gi|162599220|dbj|BAAV01006262.1|2.0 TMP00636; 115 PfamA30U 8-113 -73.900 65  PF12963.5; R7EKX0_9FIRM/6-110; Protein of unknown function (DUF3852 topsan)
18 HGC00573 gi|163306732|dbj|BABD01003960.1|2.0 TMP00669; 125 PfamA30U 7-106 -55.800 28  PF12964.5; D6D3K5_9BACE/4-98; Protein of unknown function (DUF3853 topsan)
19 HGC00579 gi|163284429|dbj|BABD01026259.1|2.0 TMP00679; 172 PfamA30U 1-143 -12.000 12  PF14905.4; R5P1C8_9PORP/377-793; Outer membrane protein beta-barrel family
20 HGC00593 gi|162858151|dbj|BABB01011554.1|1.0 TMP00709; 112 PfamA30U 8-100 -44.400 33  PF16479.3; Q5L9L8_BACFN/5-97; Domain of unknown function (DUF5056 topsan)


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ye Y, Godzik A. FATCAT: a web server for flexible structure comparison and structure similarity searching. Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W582-5.