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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 182next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 HGC00024 gi|162813637|dbj|BABA01031072.1|2.0 TMP01508; 217 PDB0516 16-217 -75.100 17  4l7t_A mol:protein length:523 NanU sialic acid binding protein
2 HGC00044 gi|162658718|dbj|BAAX01000887.1|1.0 TMP00920; 360 PDB0516 14-187 -36.700 27  2x40_A mol:protein length:721 BETA-GLUCOSIDASE
3 HGC00106 gi|162841414|dbj|BABA01003295.1|1.0 TMP01000; 81 PDB0516 1-81 -12.500 32  5FQ7 Entity 2(prereleased)
4 HGC00150 gi|162733542|dbj|BAAZ01030454.1|1.0 TMP01074; 227 PDB0516 2-150 -7.590 2c41_A mol:protein length:158 DPS FAMILY DNA-BINDING STRESS RESPONSE PROTEI
5 HGC00164 gi|163636082|dbj|BABG01000191.1|4.0 TMP00833; 173 PDB0516 2-173 -20.900 13  4pu3_A mol:protein length:454 Toxin-antitoxin system toxin HipA family
6 HGC00166 gi|163579340|dbj|BABE01005762.1|1.0 TMP00473; 223 PDB0516 1-199 -17.200 14  1zel_A mol:protein length:298 hypothetical protein Rv2827c
7 HGC00248 gi|162576253|dbj|BAAV01029229.1|2.0 TMP00024; 121 PDB0516 1-55 -6.480 21  3hkz_Y mol:protein length:104 DNA-directed RNA polymerase subunit 13
8 HGC00267 gi|163310129|dbj|BABD01000566.1|6.0 TMP00066; 164 PDB0516 4-114 -7.880 15  1o58_A mol:protein length:303 O-acetylserine sulfhydrylase
9 HGC00311 gi|163635536|dbj|BABG01000737.1|2.0 TMP00178; 122 PDB0516 1-58 -8.620 20  4c47_A mol:protein length:207 INNER MEMBRANE LIPOPROTEIN
10 HGC00374 gi|162831834|dbj|BABA01012875.1|1.0 TMP00304; 200 PDB0516 7-122 -7.600 11  4x90_A mol:protein length:380 Group XV phospholipase A2
11 HGC00422 gi|163631722|dbj|BABG01004545.1|2.0 TMP00397; 274 PDB0516 148-226 -10.900 14  2rng_A mol:protein length:79 Big defensin
12 HGC00429 gi|162734516|dbj|BAAZ01029480.1|1.0 TMP00411; 255 PDB0516 5-63 -6.650 11  2krs_A mol:protein length:74 Probable enterotoxin
13 HGC00485 gi|163636056|dbj|BABG01000217.1|3.0 TMP00523; 127 PDB0516 8-127 -7.750 15  3qy4_A mol:protein length:129 Lysozyme C
14 HGC00509 gi|162658693|dbj|BAAX01000912.1|3.0 TMP00561; 136 PDB0516 1-73 -6.440 3zjz_A mol:protein length:149 ION TRANSPORT PROTEIN
15 HGC00518 gi|162728471|dbj|BAAY01000490.1|2.0 TMP00574; 92 PDB0516 1-91 -35.800 15  4p78_A mol:protein length:143 HicB3 antitoxin
16 HGC00522 gi|163636101|dbj|BABG01000172.1|3.0 TMP00580; 203 PDB0516 10-194 -9.520 15  3nyb_A mol:protein length:323 Poly(A) RNA polymerase protein 2
18-70 -9.740 18  4wh5_A mol:protein length:162 Lincosamide resistance protein
17 HGC00552 gi|162599220|dbj|BAAV01006262.1|2.0 TMP00636; 115 PDB0516 1-96 -8.810 18  5fz2_A mol:protein length:904 ENVELOPE GLYCOPROTEIN B
18 HGC00573 gi|163306732|dbj|BABD01003960.1|2.0 TMP00669; 125 PDB0516 54-118 -11.600 20  1j9i_A mol:protein length:68 TERMINASE SMALL SUBUNIT
19 HGC00579 gi|163284429|dbj|BABD01026259.1|2.0 TMP00679; 172 PDB0516 1-148 -11.600 2x4m_A mol:protein length:298 COAGULASE/FIBRINOLYSIN
20 HGC00593 gi|162858151|dbj|BABB01011554.1|1.0 TMP00709; 112 PDB0516 3-57 -8.330 15  1rm1_C mol:protein length:286 Transcription initiation factor IIA large cha


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ye Y, Godzik A. FATCAT: a web server for flexible structure comparison and structure similarity searching. Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W582-5.