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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 1653next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|15644635|ref|NP_206803.1| transcription antitermination protein NusB (HP0001) [Helicobacter pylori 26695] 138 NEW_HUMAN_DOMAINS 55-111 -6.400 22  tr|E5RI81|E5RI81_HUMAN Uncharacterized protein OS=Homo sapiens PE=4 SV=1 (Range: 52-131)
2 gi|15644636|ref|NP_206804.1| 6,7-dimethyl-8-ribityllumazine synthase (HP0002) [Helicobacter pylori 26695] 156 NEW_HUMAN_DOMAINS 58-118 -5.130 18  sp|Q0P5Q8|FAM7A_HUMAN Protein FAM7A OS=Homo sapiens GN=FAM7A1 PE=1 SV=3 (Range: 1-69)
3 gi|15644637|ref|NP_206805.1| 2-dehydro-3-deoxyphosphooctonate aldolase (HP0003) [Helicobacter pylori 26695] 276 NEW_HUMAN_DOMAINS 198-256 -5.550 23  tr|F8W8T6|F8W8T6_HUMAN Uncharacterized protein OS=Homo sapiens GN=GSG1 PE=4 SV=1 (Range: 204-270)
4 gi|15644638|ref|NP_206806.1| carbonic anhydrase (icfA) (HP0004) [Helicobacter pylori 26695] 221 NEW_HUMAN_DOMAINS 37-76 -6.300 25  sp|Q5HYC2|K2026_HUMAN Uncharacterized protein KIAA2026 OS=Homo sapiens GN=KIAA2026 PE=2 SV=2 (Range: 1809-1944)
5 gi|15644639|ref|NP_206807.1| orotidine 5'-phosphate decarboxylase (HP0005) [Helicobacter pylori 26695] 227 NEW_HUMAN_DOMAINS 42-172 -4.700 sp|Q9HCD6|TANC2_HUMAN Protein TANC2 OS=Homo sapiens GN=TANC2 PE=1 SV=3 (Range: 641-834)
6 gi|15644640|ref|NP_206808.1| pantoate--beta-alanine ligase (HP0006) [Helicobacter pylori 26695] 276 NEW_HUMAN_DOMAINS 72-195 -5.490 17  sp|Q9H9T3|ELP3_HUMAN Elongator complex protein 3 OS=Homo sapiens GN=ELP3 PE=1 SV=2 (Range: 294-441)
7 gi|15646197|ref|NP_206811.1| outer membrane protein (HP0009) [Helicobacter pylori 26695] 634 NEW_HUMAN_DOMAINS 447-634 -5.110 15  tr|E9PPM1|E9PPM1_HUMAN Uncharacterized protein OS=Homo sapiens GN=TP53I11 PE=4 SV=1 (Range: 25-191)
8 gi|15644643|ref|NP_206812.1| chaperonin GroEL (HP0010) [Helicobacter pylori 26695] 546 NEW_HUMAN_DOMAINS 58-128 -5.110 17  sp|P42356|PI4KA_HUMAN Phosphatidylinositol 4-kinase alpha OS=Homo sapiens GN=PI4KA PE=1 SV=3 (Range: 963-1052)
9 gi|15644644|ref|NP_206813.1| co-chaperonin GroES (HP0011) [Helicobacter pylori 26695] 118 NEW_HUMAN_DOMAINS 6-93 -8.480 18  sp|Q9C0C9|UBE2O_HUMAN Ubiquitin-conjugating enzyme E2 O OS=Homo sapiens GN=UBE2O PE=1 SV=3 (Range: 116-311)
10 gi|15644645|ref|NP_206814.1| DNA primase (HP0012) [Helicobacter pylori 26695] 559 NEW_HUMAN_DOMAINS 21-91 -6.490 22  sp|A0PJM3|GORL_HUMAN Putative exonuclease GOR-like protein OS=Homo sapiens GN=REXO1L2P PE=5 SV=2 (Range: 322-408)
11 gi|15644646|ref|NP_206815.1| hypothetical protein (HP0013) [Helicobacter pylori 26695] 350 NEW_HUMAN_DOMAINS 88-209 -5.880 tr|C9JCC5|C9JCC5_HUMAN Uncharacterized protein OS=Homo sapiens GN=IZUMO2 PE=4 SV=1 (Range: 21-192)
12 gi|15644647|ref|NP_206816.1| hypothetical protein (HP0014) [Helicobacter pylori 26695] 275 NEW_HUMAN_DOMAINS 163-230 -6.510 19  sp|Q8TB92|HMGC2_HUMAN Probable 3-hydroxymethyl-3-methylglutaryl-CoA lyase 2 OS=Homo sapiens GN=HMGCLL1 PE=2 SV=3 (Range: 1-73)
13 gi|15644648|ref|NP_206817.1| hypothetical protein (HP0015) [Helicobacter pylori 26695] 93 NEW_HUMAN_DOMAINS 38-76 -6.430 23  sp|Q5SV97|CA170_HUMAN Uncharacterized protein C1orf170 OS=Homo sapiens GN=C1orf170 PE=2 SV=3 (Range: 613-696)
14 gi|15644649|ref|NP_206818.1| hypothetical protein (HP0016) [Helicobacter pylori 26695] 87 NEW_HUMAN_DOMAINS 28-85 -7.050 14  sp|Q6ZNA5|FRRS1_HUMAN Ferric-chelate reductase 1 OS=Homo sapiens GN=FRRS1 PE=2 SV=2 (Range: 502-569)
15 gi|15644650|ref|NP_206819.1| virB4 homolog (virB4) (HP0017) [Helicobacter pylori 26695] 787 NEW_HUMAN_DOMAINS 443-465 -6.870 13  sp|Q6P2S7|GNN_HUMAN Tetratricopeptide repeat protein GNN OS=Homo sapiens GN=GNN PE=2 SV=3 (Range: 217-335)
16 gi|15644651|ref|NP_206820.1| hypothetical protein (HP0018) [Helicobacter pylori 26695] 469 NEW_HUMAN_DOMAINS 34-152 -13.600 sp|Q14674|ESPL1_HUMAN Separin OS=Homo sapiens GN=ESPL1 PE=1 SV=3 (Range: 717-845)
17 gi|15644652|ref|NP_206821.1| chemotaxis protein (cheV) (HP0019) [Helicobacter pylori 26695] 321 NEW_HUMAN_DOMAINS 195-319 -23.500 13  sp|Q9NX45|SOLH2_HUMAN Spermatogenesis- and oogenesis-specific basic helix-loop-helix-containing protein 2 OS=Homo sapiens GN=SOHLH2 PE=2 SV=2 (Range: 1-196)
18 gi|15644653|ref|NP_206822.1| carboxynorspermidine decarboxylase (nspC) (HP0020) [Helicobacter pylori 26695] 405 NEW_HUMAN_DOMAINS 175-304 -4.950 11  sp|O95866|G6B_HUMAN Protein G6b OS=Homo sapiens GN=G6B PE=1 SV=1 (Range: 18-142)
19 gi|15644654|ref|NP_206823.1| lipid A 1-phosphatase (HP0021) [Helicobacter pylori 26695] 190 NEW_HUMAN_DOMAINS 120-167 -6.920 tr|E7ENG5|E7ENG5_HUMAN Uncharacterized protein OS=Homo sapiens GN=G6PC PE=4 SV=1 (Range: 83-178)
20 gi|15644655|ref|NP_206824.1| lipid A phosphoethanolamine transferase (HP0022) [Helicobacter pylori 26695] 521 NEW_HUMAN_DOMAINS 403-482 -5.890 18  sp|Q6UWP7|LCLT1_HUMAN Lysocardiolipin acyltransferase 1 OS=Homo sapiens GN=LCLAT1 PE=1 SV=1 (Range: 253-360)


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ye Y, Godzik A. FATCAT: a web server for flexible structure comparison and structure similarity searching. Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W582-5.