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# Query Length Result vs. Range Score %id Covered by template(s)
1 IDP00001 aldehyde-alcohol dehydrogenase BA_4599 [Bacillus anthracis str. Ames] 867 PfamA30U 2-451 -25.700 15  PF00171.20; BETB_ECOLI/15-479; Aldehyde dehydrogenase family
464-856 -69.800 29  PF00465.17; Q2SC87_HAHCH/11-388; Iron-containing alcohol dehydrogenase
2 IDP00002 surface layer protein, (pxo1-54) GBAA_pXO1_0079 [Bacillus anthracis str. 'Ames Ancestor'] 404 PfamA30U 47-90 -17.700 25  PF00395.18; U5LGG8_9BACI/157-200; S-layer homology domain
3 IDP00003 gene: gerXC; spore germination protein xc, (pxo1-112) GBAA_pXO1_0158 [Bacillus anthracis str. 'Ames Ancestor'] 317 PfamA30U 1-110 -9.900 PF16408.3; R6U353_9BACE/1-123; Domain of unknown function (DUF5016 topsan)
218-317 -30.600 12  PF05504.9; X4ZC10_9BACL/228-392; Spore germination B3/ GerAC like, C-terminal
4 IDP00004 Chromosomal replication initiator protein dnaA BA_0001 [Bacillus anthracis str. Ames] 446 PfamA30U 5-68 -16.400 20  PF11638.6; DNAA_LAWIP/5-67; DnaA N-terminal domain
111-329 -109.000 72  PF00308.16; DNAA_STRCO/317-535; Bacterial dnaA protein
356-424 -37.600 68  PF08299.9; D9QS97_ACEAZ/358-426; Bacterial dnaA protein helix-turn-helix
5 IDP00005 internalin, putative BA_0552 [Bacillus anthracis str. Ames] 1070 PfamA30U 577-712 -27.700 22  PF14580.4; H3BFR2_LATCH/1-175; Leucine-rich repeat
857-1068 -10.800 PF15772.3; G5CBI0_HETGA/104-332; UPF0688 topsan family
907-1066 -18.500 11  PF15677.3; H2NCC0_PONAB/1-152; Cell cycle exit and neuronal differentiation protein 1
6 IDP00006 immune inhibitor A metalloprotease BA_0672 [Bacillus anthracis str. Ames] 799 PfamA30U 152-795 -164.000 72  PF05547.9; C2WZ33_BACCE/147-791; Immune inhibitor A peptidase M6
7 IDP00007 gene: racE-1; glutamate racemase BA_0847 [Bacillus anthracis str. Ames] 276 PfamA30U 10-219 -88.700 37  PF01177.20; R7EMK1_9BACE/12-229; Asp/Glu/Hydantoin racemase
8 IDP00008 gene: cysG; uroporphyrin-III C-methyltransferase BA_1445 [Bacillus anthracis str. Ames] 258 PfamA30U 3-215 -44.200 23  PF00590.18; Q3A6A0_PELCD/39-272; Tetrapyrrole (Corrin/Porphyrin) Methylases
9 IDP00009 3-dehydroquinate synthase BA_1538 [Bacillus anthracis str. Ames] 363 PfamA30U 17-269 -23.400 15  PF13685.4; Q162K0_ROSDO/40-301; Iron-containing alcohol dehydrogenase
67-324 -102.000 42  PF01761.18; AROB_SYNY3/68-330; 3-dehydroquinate synthase
10 IDP00010 uroporphyrin-III C-methyltransferase, putative BA_2144 [Bacillus anthracis str. Ames] 474 PfamA30U 4-215 -39.200 24  PF00590.18; Q3A6A0_PELCD/39-272; Tetrapyrrole (Corrin/Porphyrin) Methylases
264-469 -40.900 13  PF02602.13; Q6AMG2_DESPS/275-509; Uroporphyrinogen-III synthase HemD
11 IDP00011 alcohol dehydrogenase, iron-containing BA_2222 [Bacillus anthracis str. Ames] 392 PfamA30U 2-371 -102.000 34  PF00465.17; Q2SC87_HAHCH/11-388; Iron-containing alcohol dehydrogenase
12 IDP00012 3-phosphoshikimate 1-carboxyvinyltransferase (5-enolpyruvylshikimate-3-phosphate synthase) (EPSP synthase) (EPSPS) BA_2953 [Bacillus anthracis str. Ames] 429 PfamA30U 10-424 -24.100 22  PF00275.18; MURA_ECOLI/6-406; EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
13 IDP00013 LPXTG-motif cell wall anchor domain protein BA_3254 [Bacillus anthracis str. Ames] 372 PfamA30U 1-372 -27.700 10  PF15921.3; G5BJQ7_HETGA/1-1111; Coiled-coil domain-containing protein 158
42-372 -31.000 14  PF15070.4; W5MC41_LEPOC/402-1036; Putative golgin subfamily A member 2-like protein 5
14 IDP00014 Protein recA (Recombinase A) BA_3915 [Bacillus anthracis str. Ames] 343 PfamA30U 6-267 -129.000 67  PF00154.19; RECA_ACIAD/7-268; recA bacterial DNA recombination protein
15 IDP00015 UDP-N-acetylenolpyruvoylglucosamine reductase 1 (UDP-N-acetylmuramate dehydrogenase 1) BA_4048 [Bacillus anthracis str. Ames] 301 PfamA30U 35-163 -15.100 14  PF01565.21; Q82SS0_NITEU/46-186; FAD binding domain
201-299 -61.700 50  PF02873.14; Q24TE7_DESHY/186-285; UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain
16 IDP00016 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase) (Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) (UDP-MurNAc-tripeptide synthetase) BA_4053 [Bacillus anthracis str. Ames] 491 PfamA30U 61-259 -15.300 PF16292.3; A9WF69_CHLAA/4-305; Domain of unknown function (DUF4938 topsan)
106-312 -81.600 37  PF08245.10; MURE_THEMA/108-304; Mur ligase middle domain
332-418 -55.200 46  PF02875.19; MURE_HELPY/294-375; Mur ligase family, glutamate ligase domain
17 IDP00017 gene: ribBA; Riboflavin biosynthesis protein ribBA [Includes: 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase); GTP cyclohydrolase-2 (GTP cyclohydrolase II)] BA_4333 [Bacillus anthracis str. Ames] 397 PfamA30U 6-196 -87.300 53  PF00926.17; R7D2C4_9BACE/10-201; 3,4-dihydroxy-2-butanone 4-phosphate synthase
205-371 -89.900 57  PF00925.18; G4T1J0_META2/10-176; GTP cyclohydrolase II
18 IDP00018 gene: racE-2; glutamate racemase BA_4717 [Bacillus anthracis str. Ames] 269 PfamA30U 7-216 -89.200 39  PF01177.20; R7EMK1_9BACE/12-229; Asp/Glu/Hydantoin racemase
19 IDP00019 gene: pykA-2; pyruvate kinase BA_4843 [Bacillus anthracis str. Ames] 585 PfamA30U 1-343 -107.000 49  PF00224.19; KPYK_EMENI/32-379; Pyruvate kinase, barrel domain
356-469 -46.800 28  PF02887.14; D5C1C2_NITHN/363-477; Pyruvate kinase, alpha/beta domain
509-575 -14.400 40  PF00391.21; I4BU05_ANAMD/423-506; PEP-utilising enzyme, mobile domain
20 IDP00020 UDP-N-acetylenolpyruvoylglucosamine reductase 2 (UDP-N-acetylmuramate dehydrogenase 2) BA_5315 [Bacillus anthracis str. Ames] 305 PfamA30U 38-165 -16.000 20  PF01565.21; Q82SS0_NITEU/46-186; FAD binding domain
202-300 -60.900 52  PF02873.14; Q24TE7_DESHY/186-285; UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain


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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ye Y, Godzik A. FATCAT: a web server for flexible structure comparison and structure similarity searching. Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W582-5.