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# Query Length Result vs. Range Score %id Covered by template(s)
1 [H] COG0001 Glutamate-1-semialdehyde aminotransferase 411 VFDB 5-411 -38.400 25  VFG016046(gi:15597609) (pvdH) diaminobutyrate-2-oxoglutarate aminotransferase PvdH [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
2 [E] COG0002 Acetylglutamate semialdehyde dehydrogenase 336 VFDB 1-225 -10.200 12  VFG002557(gi:53720407) (wcbJ) capsular polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
3 [P] COG0003 Oxyanion-translocating ATPase 396 VFDB 1-268 -12.700 15  VFG001368(gi:15900278) (cps4D) capsular polysaccharide biosynthesis protein Cps4D [Capsule (VF0144)] [Streptococcus pneumoniae TIGR4]
3-354 -11.900 18  VFG001265(gi:15596651) (fleN) flagellar synthesis regulator FleN [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
325-396 -9.570 16  VFG001397(gi:15609168) (hspX) Heat shock protein HspX (alpha-crystallin homolog) (14 kDa antigen) (HSP16.3) [HspX (VF0301)] [Mycobacterium tuberculosis H37Rv]
4 [P] COG0004 Ammonia permease 470 VFDB 43-98 -5.660 19  VFG002209(gi:17988370) (virB2) type IV secretion system protein VirB2 [VirB type IV secretion system (VF0365)] [Brucella melitensis bv. 1 str. 16M]
5 [F] COG0005 Purine nucleoside phosphorylase 271 VFDB 51-269 -7.090 13  VFG002473(gi:53722537) (bopC) Type III secretion system effector BopC [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
6 [E] COG0006 Xaa-Pro aminopeptidase 356 VFDB 125-317 -5.270 VFG001369(gi:15900279) (cps4E) capsular polysaccharide biosynthesis protein Cps4E [Capsule (VF0144)] [Streptococcus pneumoniae TIGR4]
7 [H] COG0007 Uroporphyrinogen-III methylase 292 VFDB 88-230 -5.430 15  VFG002163(gi:52840692) (icmN/dotK) Dot/Icm type IV secretion system protein IcmN/DotK [Dot/Icm (VF0156)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
8 [J] COG0008 Glutamyl- and glutaminyl-tRNA synthetases 554 VFDB 46-532 -4.620 10  VFG000884(gi:26249425) (papC) usher protein PapC [P fimbriae (VF0220)] [Escherichia coli CFT073]
9 [J] COG0009 Putative translation factor (SUA5) 346 VFDB 82-284 -5.330 14  VFG045492(gi:52840620) (lpg0375) Dot/Icm type IV secretion system effector [Dot/Icm (VF0156)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
10 [E] COG0010 Arginase/agmatinase/formimionoglutamate hydrolase, arginase family 306 VFDB 45-297 -5.740 17  VFG002223(gi:17987679) (pmm) phosphomannomutase [LPS (VF0367)] [Brucella melitensis bv. 1 str. 16M]
11 [S] COG0011 Uncharacterized conserved protein 94 VFDB 4-94 -4.920 12  VFG041291(gi:52841930) (ppeB) Dot/Icm type IV secretion system effector PpeB [Dot/Icm (SS047)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
12 [J] COG0012 Predicted GTPase, probable translation factor 397 VFDB 1-363 -11.600 11  VFG001859(gi:52842863) (feoB) ferrous iron transporter B [FeoAB (VF0160)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
13 [J] COG0013 Alanyl-tRNA synthetase 872 VFDB 246-660 -7.390 12  VFG002328(gi:123442764) (fliF) flagellar M-ring protein FliF [Flagella (VF0394)] [Yersinia enterocolitica subsp. enterocolitica 8081]
14 [E] COG0014 Gamma-glutamyl phosphate reductase 417 VFDB 1-408 -19.900 17  VFG006717(gi:16803674) (lap) Listeria adhesion protein Lap [Lap (VF0444)] [Listeria monocytogenes EGD-e]
15 [F] COG0015 Adenylosuccinate lyase 431 VFDB 187-253 -5.350 23  VFG011430(gi:17987758) (acpXL) acyl carrier protein [LPS (CVF383)] [Brucella melitensis bv. 1 str. 16M]
16 [J] COG0016 Phenylalanyl-tRNA synthetase alpha subunit 344 VFDB 26-341 -5.480 14  VFG001153(gi:475773) (hmw1C) glycosyltransferase [HMW1/HMW2 (VF0038)] [Haemophilus influenzae str. 12]
17 [J] COG0017 Aspartyl/asparaginyl-tRNA synthetases 430 VFDB 316-374 -4.840 15  VFG001818(gi:15609514) (mbtH) putative protein MbtH [Mycobactin (VF0299)] [Mycobacterium tuberculosis H37Rv]
18 [J] COG0018 Arginyl-tRNA synthetase 556 VFDB 315-443 -5.460 15  VFG001867(gi:52843161) (sodB) superoxide dismutase [SodB (VF0169)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
19 [E] COG0019 Diaminopimelate decarboxylase 436 VFDB 131-401 -4.910 12  VFG002343(gi:123442779) (flgJ) flagellar rod assembly protein/muramidase FlgJ [Flagella (VF0394)] [Yersinia enterocolitica subsp. enterocolitica 8081]
20 [I] COG0020 Undecaprenyl pyrophosphate synthase 248 VFDB 2-248 -110.000 48  VFG002190(gi:29376987) (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583]

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Friedberg I. and Godzik A Connecting the Protein Structure Universe by Using Sparse Recurring Fragments. Structure (Camb.) (2005) Aug;13(8):1213-24