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Shows best template from each database, and all templates with significant scores covering different query fragments

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# Query Length Result vs. Range Score %id Covered by template(s)
1 [H] COG0001 Glutamate-1-semialdehyde aminotransferase 411 PDB0516 1-411 -134.000 84  2cfb_A mol:protein length:411 GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE
2 [E] COG0002 Acetylglutamate semialdehyde dehydrogenase 336 PDB0516 1-336 -118.000 39  1xyg_A mol:protein length:359 putative N-acetyl-gamma-glutamyl-phosphate re
3 [P] COG0003 Oxyanion-translocating ATPase 396 PDB0516 2-392 -93.700 25  3igf_A mol:protein length:374 All4481 protein
4 [P] COG0004 Ammonia permease 470 PDB0516 31-469 -117.000 43  2nmr_A mol:protein length:424 Ammonia channel
5 [F] COG0005 Purine nucleoside phosphorylase 271 PDB0516 1-270 -116.000 46  1vmk_A mol:protein length:277 purine nucleoside phosphorylase
6 [E] COG0006 Xaa-Pro aminopeptidase 356 PDB0516 1-356 -117.000 31  3q6d_A mol:protein length:356 Proline dipeptidase
7 [H] COG0007 Uroporphyrinogen-III methylase 292 PDB0516 18-281 -112.000 73  1s4d_A mol:protein length:280 Uroporphyrin-III C-methyltransferase
8 [J] COG0008 Glutamyl- and glutaminyl-tRNA synthetases 554 PDB0516 1-554 -189.000 100  1o0b_A mol:protein length:554 Glutaminyl-tRNA synthetase
9 [J] COG0009 Putative translation factor (SUA5) 346 PDB0516 3-346 -115.000 45  2eqa_A mol:protein length:352 Hypothetical protein ST1526
10 [E] COG0010 Arginase/agmatinase/formimionoglutamate hydrolase, arginase family 306 PDB0516 4-305 -116.000 37  1gq6_A mol:protein length:313 PROCLAVAMINATE AMIDINO HYDROLASE
11 [S] COG0011 Uncharacterized conserved protein 94 PDB0516 1-94 -55.700 100  1vk8_A mol:protein length:106 hypothetical protein TM0486
12 [J] COG0012 Predicted GTPase, probable translation factor 397 PDB0516 1-397 -142.000 88  1wxq_A mol:protein length:397 GTP-binding protein
13 [J] COG0013 Alanyl-tRNA synthetase 872 PDB0516 1-703 -167.000 28  2zze_A mol:protein length:752 Alanyl-tRNA synthetase
1-872 -152.000 26  3wqy_A mol:protein length:906 Alanine--tRNA ligase
14 [E] COG0014 Gamma-glutamyl phosphate reductase 417 PDB0516 2-417 -132.000 45  4ghk_A mol:protein length:444 Gamma-glutamyl phosphate reductase
15 [F] COG0015 Adenylosuccinate lyase 431 PDB0516 1-431 -135.000 55  1f1o_A mol:protein length:431 ADENYLOSUCCINATE LYASE
16 [J] COG0016 Phenylalanyl-tRNA synthetase alpha subunit 344 PDB0516 3-342 -131.000 53  4p71_C mol:protein length:338 Phenylalanine--tRNA ligase alpha subunit
17 [J] COG0017 Aspartyl/asparaginyl-tRNA synthetases 430 PDB0516 8-430 -124.000 45  1x54_A mol:protein length:434 Asparaginyl-tRNA synthetase
18 [J] COG0018 Arginyl-tRNA synthetase 556 PDB0516 3-556 -72.700 30  2zue_A mol:protein length:629 Arginyl-tRNA synthetase
93-556 -125.000 39  3fnr_A mol:protein length:464 Arginyl-tRNA synthetase
19 [E] COG0019 Diaminopimelate decarboxylase 436 PDB0516 5-434 -125.000 40  1hkv_A mol:protein length:453 DIAMINOPIMELATE DECARBOXYLASE
20 [I] COG0020 Undecaprenyl pyrophosphate synthase 248 PDB0516 2-244 -121.000 49  1jp3_A mol:protein length:253 undecaprenyl pyrophosphate synthase


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ye Y, Godzik A. FATCAT: a web server for flexible structure comparison and structure similarity searching. Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W582-5.