current user: public

anford Burnham Prebys Medical Discovery Institute
We are hiring bioinformatics experts and software developers. Join us!

Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:

Page size:   Sort by score   Show only entries containing string:

Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 8581next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 [H] COG0001 Glutamate-1-semialdehyde aminotransferase 411 NEW_HUMAN_DOMAINS 165-238 -5.530 25  sp|Q86UD0|CI140_HUMAN Protein C9orf140 OS=Homo sapiens GN=C9orf140 PE=2 SV=2 (Range: 24-106)
2 [E] COG0002 Acetylglutamate semialdehyde dehydrogenase 336 NEW_HUMAN_DOMAINS 162-254 -6.190 sp|C9J069|CI172_HUMAN Uncharacterized protein C9orf172 OS=Homo sapiens GN=C9orf172 PE=3 SV=1 (Range: 869-976)
3 [P] COG0003 Oxyanion-translocating ATPase 396 NEW_HUMAN_DOMAINS 2-64 -6.700 17  sp|Q9HCU5|PREB_HUMAN Prolactin regulatory element-binding protein OS=Homo sapiens GN=PREB PE=1 SV=2 (Range: 1-91)
4 [P] COG0004 Ammonia permease 470 NEW_HUMAN_DOMAINS 237-335 -6.770 12  sp|Q9UHW9|S12A6_HUMAN Solute carrier family 12 member 6 OS=Homo sapiens GN=SLC12A6 PE=1 SV=2 (Range: 364-453)
5 [F] COG0005 Purine nucleoside phosphorylase 271 NEW_HUMAN_DOMAINS 194-257 -5.060 17  sp|Q7Z5Y7|KCD20_HUMAN BTB/POZ domain-containing protein KCTD20 OS=Homo sapiens GN=KCTD20 PE=1 SV=1 (Range: 339-419)
6 [E] COG0006 Xaa-Pro aminopeptidase 356 NEW_HUMAN_DOMAINS 158-320 -6.110 18  sp|Q9UKN5|PRDM4_HUMAN PR domain zinc finger protein 4 OS=Homo sapiens GN=PRDM4 PE=1 SV=3 (Range: 1-167)
7 [H] COG0007 Uroporphyrinogen-III methylase 292 NEW_HUMAN_DOMAINS 62-156 -6.160 15  sp|Q6Y2X3|DJC14_HUMAN DnaJ homolog subfamily C member 14 OS=Homo sapiens GN=DNAJC14 PE=2 SV=2 (Range: 512-616)
8 [J] COG0008 Glutamyl- and glutaminyl-tRNA synthetases 554 NEW_HUMAN_DOMAINS 115-273 -4.660 18  sp|Q6UX73|CP089_HUMAN UPF0764 protein C16orf89 OS=Homo sapiens GN=C16orf89 PE=2 SV=2 (Range: 103-292)
9 [J] COG0009 Putative translation factor (SUA5) 346 NEW_HUMAN_DOMAINS 93-156 -4.710 21  tr|E7ENL1|E7ENL1_HUMAN Uncharacterized protein OS=Homo sapiens GN=MAEA PE=4 SV=1 (Range: 187-248)
10 [E] COG0010 Arginase/agmatinase/formimionoglutamate hydrolase, arginase family 306 NEW_HUMAN_DOMAINS 36-294 -5.560 11  sp|Q96AB6|NTAN1_HUMAN Protein N-terminal asparagine amidohydrolase OS=Homo sapiens GN=NTAN1 PE=1 SV=3 (Range: 1-310)
11 [S] COG0011 Uncharacterized conserved protein 94 NEW_HUMAN_DOMAINS 16-66 -5.590 17  sp|Q9H7D7|WDR26_HUMAN WD repeat-containing protein 26 OS=Homo sapiens GN=WDR26 PE=1 SV=3 (Range: 124-301)
12 [J] COG0012 Predicted GTPase, probable translation factor 397 NEW_HUMAN_DOMAINS 77-139 -4.950 23  sp|P78312|F193A_HUMAN Protein FAM193A OS=Homo sapiens GN=FAM193A PE=1 SV=2 (Range: 409-480)
13 [J] COG0013 Alanyl-tRNA synthetase 872 NEW_HUMAN_DOMAINS 299-415 -5.950 16  tr|E9PG74|E9PG74_HUMAN Uncharacterized protein OS=Homo sapiens GN=TPCN2 PE=4 SV=2 (Range: 71-194)
14 [E] COG0014 Gamma-glutamyl phosphate reductase 417 NEW_HUMAN_DOMAINS 359-412 -5.560 20  sp|Q9UPA5|BSN_HUMAN Protein bassoon OS=Homo sapiens GN=BSN PE=1 SV=4 (Range: 2013-2108)
15 [F] COG0015 Adenylosuccinate lyase 431 NEW_HUMAN_DOMAINS 261-325 -6.880 14  sp|Q9NP73|ALG13_HUMAN UDP-N-acetylglucosamine transferase subunit ALG13 homolog OS=Homo sapiens GN=ALG13 PE=1 SV=2 (Range: 1060-1137)
16 [J] COG0016 Phenylalanyl-tRNA synthetase alpha subunit 344 NEW_HUMAN_DOMAINS 132-258 -5.000 14  sp|Q5BN46|CI116_HUMAN UPF0691 protein C9orf116 OS=Homo sapiens GN=C9orf116 PE=2 SV=1 (Range: 21-136)
17 [J] COG0017 Aspartyl/asparaginyl-tRNA synthetases 430 NEW_HUMAN_DOMAINS 132-220 -4.530 12  tr|E7ERK0|E7ERK0_HUMAN Uncharacterized protein OS=Homo sapiens GN=MUC4 PE=4 SV=1 (Range: 4310-4442)
18 [J] COG0018 Arginyl-tRNA synthetase 556 NEW_HUMAN_DOMAINS 1-183 -19.300 11  sp|Q5D0E6|DALD3_HUMAN DALR anticodon-binding domain-containing protein 3 OS=Homo sapiens GN=DALRD3 PE=2 SV=2 (Range: 1-178)
19 [E] COG0019 Diaminopimelate decarboxylase 436 NEW_HUMAN_DOMAINS 313-342 -5.830 32  sp|Q70EK8|UBP53_HUMAN Inactive ubiquitin carboxyl-terminal hydrolase 53 OS=Homo sapiens GN=USP53 PE=2 SV=2 (Range: 989-1073)
20 [I] COG0020 Undecaprenyl pyrophosphate synthase 248 NEW_HUMAN_DOMAINS 39-201 -6.280 13  sp|A7E2V4|K0913_HUMAN Zinc finger SWIM domain-containing protein KIAA0913 OS=Homo sapiens GN=KIAA0913 PE=1 SV=1 (Range: 1268-1423)


FFAS is supported by the NIH grant R01-GM087218-01
9 9 7 8 3   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ye Y, Godzik A. FATCAT: a web server for flexible structure comparison and structure similarity searching. Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W582-5.