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# Query Length Result vs. Range Score %id Covered by template(s)
1 [H] COG0001 Glutamate-1-semialdehyde aminotransferase 411 HGM_OVER 259-405 -3.560 11  PB007843 JCVI_PEP_1096682172521 /source_dna_id=JCVI_ORF_1096682172520 /offset=0 /translation_table=11 /length=152 /full_length=152
2 [E] COG0002 Acetylglutamate semialdehyde dehydrogenase 336 HGM_OVER 18-307 -2.860 11  PB076697 gi|160881556|ref|YP_001560524.1| hypothetical protein Cphy_3432 [Clostridium phytofermentans ISDg]gi|160430222|gb|ABX43785.1| conserved hypothetical protein [Clostridium phytofermentans ISDg]
3 [P] COG0003 Oxyanion-translocating ATPase 396 HGM_OVER 14-286 -4.650 PB022506 Q11RP6_CYTH3/1-298 PB022506; Pfam-B_22506;
4 [P] COG0004 Ammonia permease 470 HGM_OVER 310-437 -3.310 14  PB032242 Q8FLW6_COREF/1-257 PB032242; Pfam-B_32242;
5 [F] COG0005 Purine nucleoside phosphorylase 271 HGM_OVER 43-160 -4.060 13  HGC00789 gi|163310627|dbj|BABD01000073.1|7.0 TMP01036;
6 [E] COG0006 Xaa-Pro aminopeptidase 356 HGM_OVER 117-304 -3.150 10  HGC00166 gi|163579340|dbj|BABE01005762.1|1.0 TMP00473;
7 [H] COG0007 Uroporphyrinogen-III methylase 292 HGM_OVER 44-167 -3.900 12  HGC00044 gi|162658718|dbj|BAAX01000887.1|1.0 TMP00920;
8 [J] COG0008 Glutamyl- and glutaminyl-tRNA synthetases 554 HGM_OVER 109-204 -4.280 16  PB027498 Q7MTK6_PORGI/1-146 PB027498; Pfam-B_27498;
9 [J] COG0009 Putative translation factor (SUA5) 346 HGM_OVER 1-200 -3.180 12  PB000119 Q6KIT1_MYCMO/1-381 PB000119; Pfam-B_119;
10 [E] COG0010 Arginase/agmatinase/formimionoglutamate hydrolase, arginase family 306 HGM_OVER 89-243 -3.500 12  HGC00164 gi|163636082|dbj|BABG01000191.1|4.0 TMP00833;
11 [S] COG0011 Uncharacterized conserved protein 94 HGM_OVER 21-80 -4.140 20  PB009661 _Gut.Meta.Jp.0000785_ gi|162567239|dbj|BAAU01000237.1||2 (- 3549:4008~0 complete)
12 [J] COG0012 Predicted GTPase, probable translation factor 397 HGM_OVER 165-397 -3.250 PB005346 A0R807_PELPD/1-258 PB005346; Pfam-B_5346;
13 [J] COG0013 Alanyl-tRNA synthetase 872 HGM_OVER 322-434 -5.070 10  PB011130 gi|88806557|ref|ZP_01122074.1| hypothetical protein RB2501_00756 [Robiginitalea biformata HTCC2501]gi|88783389|gb|EAR14561.1| hypothetical protein RB2501_00756 [Robiginitalea biformata HTCC2501]
14 [E] COG0014 Gamma-glutamyl phosphate reductase 417 HGM_OVER 173-364 -3.460 PB012386 gi|82541244|ref|XP_724876.1| blood-stage membrane protein Ag-1 [Plasmodium yoelii yoelii str. 17XNL]gi|23479680|gb|EAA16441.1| blood-stage membrane protein Ag-1 [Plasmodium yoelii yoelii]
15 [F] COG0015 Adenylosuccinate lyase 431 HGM_OVER 175-294 -2.740 14  PB038401 Q8RFH0_FUSNN/1-210 PB038401; Pfam-B_38401;
16 [J] COG0016 Phenylalanyl-tRNA synthetase alpha subunit 344 HGM_OVER 1-145 -2.870 13  PB044822 Q89ZL7_BACTN/1-147 PB044822; Pfam-B_44822;
17 [J] COG0017 Aspartyl/asparaginyl-tRNA synthetases 430 HGM_OVER 221-335 -3.290 12  HGC00993 gi|163626727|dbj|BABG01009540.1|1.0 TMP01352;
18 [J] COG0018 Arginyl-tRNA synthetase 556 HGM_OVER 368-478 -3.330 18  PB004996 Q5NNS6_ZYMMO/1-150 PB004996; Pfam-B_4996;
19 [E] COG0019 Diaminopimelate decarboxylase 436 HGM_OVER 328-428 -3.580 11  PB035451 Q3Z7G7_DEHE1/1-135 PB035451; Pfam-B_35451;
20 [I] COG0020 Undecaprenyl pyrophosphate synthase 248 HGM_OVER 68-212 -4.590 13  PB028090 gi|167758043|ref|ZP_02430170.1| hypothetical protein CLOSCI_00381 [Clostridium scindens ATCC 35704]gi|167663940|gb|EDS08070.1| hypothetical protein CLOSCI_00381 [Clostridium scindens ATCC 35704]


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ye Y, Godzik A. FATCAT: a web server for flexible structure comparison and structure similarity searching. Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W582-5.