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Shows best template from each database, and all templates with significant scores covering different query fragments

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# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|15894240|ref|NP_347589.1| hypothetical protein (CA_C0953) [Clostridium acetobutylicum ATCC 824] (Range: 1-132) 132 PfamA30U 42-132 -7.040 12  PF00168.28; BON3_ARATH/52-157; C2 domain
2 gi|15895268|ref|NP_348617.1| ABC-type transport system, ATPase component (CA_C1998) [Clostridium acetobutylicum ATCC 824] (Range: 1-224) 224 PfamA30U 18-215 -18.400 13  PF10443.7; C8VEZ9_EMENI/373-791; RNA12 protein
24-173 -41.000 28  PF00005.25; YTFR_ECOLI/25-174; ABC transporter
3 gi|15895079|ref|NP_348428.1| ribosome-binding factor A (CA_C1803) [Clostridium acetobutylicum ATCC 824] (Range: 1-121) 121 PfamA30U 5-109 -61.100 39  PF02033.16; R5QDT1_9FIRM/5-110; Ribosome-binding factor A
4 gi|15896238|ref|NP_349587.1| dimethyladenosine transferase (CA_C2986) [Clostridium acetobutylicum ATCC 824] (Range: 1-276) 276 PfamA30U 14-270 -117.000 48  PF00398.18; RSMA_BACSU/19-283; Ribosomal RNA adenine dimethylase
5 gi|15894673|ref|NP_348022.1| phosphoribosylglycinamide formyltransferase (CA_C1394) [Clostridium acetobutylicum ATCC 824] (Range: 1-204) 204 PfamA30U 2-185 -89.400 40  PF00551.17; PUR2_DROME/1154-1336; Formyl transferase
6 gi|15894664|ref|NP_348013.1| Alpha-ribazole-5'-phosphate phosphatase, CobC (CA_C1385) [Clostridium acetobutylicum ATCC 824] (Range: 1-191) 191 PfamA30U 4-191 -85.300 26  PF00300.20; B1VGF0_CORU7/234-430; Histidine phosphatase superfamily (branch 1)
7 gi|15894369|ref|NP_347718.1| Beta-glucosidase family protein (CA_C1084) [Clostridium acetobutylicum ATCC 824] (Range: 1-474) 474 PfamA30U 2-469 -160.000 61  PF00232.16; BGLC_BACSU/5-475; Glycosyl hydrolase family 1
8 gi|15896898|ref|NP_350247.1| alpha/beta fold family hydrolase (CA_C3665) [Clostridium acetobutylicum ATCC 824] (Range: 1-265) 265 PfamA30U 7-264 -56.700 16  PF02273.13; C7BN06_PHOAA/8-301; Acyl transferase
9 gi|15895531|ref|NP_348880.1| ATP-dependent exonuclease synthesis protein AddB (CA_C2263) [Clostridium acetobutylicum ATCC 824] (Range: 1-500) 500 PfamA30U 10-497 -14.400 11  PF04257.12; RECC_ECOLI/1-806; Exodeoxyribonuclease V, gamma subunit
10 gi|15895531|ref|NP_348880.1| ATP-dependent exonuclease synthesis protein AddB (CA_C2263) [Clostridium acetobutylicum ATCC 824] (Range: 251-750) 500 PfamA30U 42-429 -23.200 14  PF04257.12; RECC_ECOLI/1-806; Exodeoxyribonuclease V, gamma subunit
11 gi|15895531|ref|NP_348880.1| ATP-dependent exonuclease synthesis protein AddB (CA_C2263) [Clostridium acetobutylicum ATCC 824] (Range: 501-1000) 500 PfamA30U 233-498 -11.800 16  PF06023.10; Q977B6_SULTO/1-288; Archaeal protein of unknown function (DUF911 topsan)
274-500 -84.300 36  PF12705.5; D6XUK2_BACIE/780-1125; PD-(D/E)XK nuclease superfamily
12 gi|15895531|ref|NP_348880.1| ATP-dependent exonuclease synthesis protein AddB (CA_C2263) [Clostridium acetobutylicum ATCC 824] (Range: 751-1153) 403 PfamA30U 24-364 -118.000 34  PF12705.5; D6XUK2_BACIE/780-1125; PD-(D/E)XK nuclease superfamily
13 gi|15895492|ref|NP_348841.1| chemotaxis protein CheW (CA_C2224) [Clostridium acetobutylicum ATCC 824] (Range: 1-147) 147 PfamA30U 8-143 -16.300 16  PF01584.17; Q8XQ78_RALSO/559-691; CheW-like domain
14 gi|15894672|ref|NP_348021.1| phosphoribosylaminoimidazole synthetase (CA_C1393) [Clostridium acetobutylicum ATCC 824] (Range: 1-332) 332 PfamA30U 62-141 -9.500 21  PF00586.22; E6WZK0_NITSE/47-154; AIR synthase related protein, N-terminal domain
173-328 -65.800 44  PF02769.20; PUR5_NEIMB/175-337; AIR synthase related protein, C-terminal domain
15 gi|15893880|ref|NP_347229.1| riboflavin synthase subunit alpha (CA_C0591) [Clostridium acetobutylicum ATCC 824] (Range: 1-213) 213 PfamA30U 97-181 -39.200 48  PF00677.15; B3EB72_GEOLS/99-183; Lumazine binding domain
16 gi|15893578|ref|NP_346927.1| hypothetical protein (CA_C0286) [Clostridium acetobutylicum ATCC 824] (Range: 1-244) 244 PfamA30U 4-178 -61.500 11  PF12730.5; R6N7Z5_9FIRM/4-186; ABC-2 family transporter protein
4-243 -22.700 10  PF12679.5; E4NSW3_HALBP/4-306; ABC-2 family transporter protein
17 gi|15896862|ref|NP_350211.1| oligopeptide ABC transporter, ATPase component (CA_C3628) [Clostridium acetobutylicum ATCC 824] (Range: 1-322) 322 PfamA30U 31-183 -28.000 26  PF00005.25; YTFR_ECOLI/25-174; ABC transporter
36-287 -11.000 12  PF10443.7; C8VEZ9_EMENI/373-791; RNA12 protein
234-301 -32.700 38  PF08352.10; Q8TTX6_METAC/231-290; Oligopeptide/dipeptide transporter, C-terminal region
18 gi|15895331|ref|NP_348680.1| segregation and condensation protein A (CA_C2061) [Clostridium acetobutylicum ATCC 824] (Range: 1-249) 249 PfamA30U 20-243 -52.100 15  PF02616.12; P74212_SYNY3/16-259; Segregation and condensation protein ScpA
19 gi|15894096|ref|NP_347445.1| hydrogenase formation factor (hypE) (CA_C0809) [Clostridium acetobutylicum ATCC 824] (Range: 1-335) 335 PfamA30U 37-128 -10.100 21  PF00586.22; E6WZK0_NITSE/47-154; AIR synthase related protein, N-terminal domain
82-307 -9.650 11  PF12818.5; VG75_EHV2/265-542; dsDNA viral tegument protein
20 gi|15895945|ref|NP_349294.1| DNA helicase (CA_C2687) [Clostridium acetobutylicum ATCC 824] (Range: 1-714) 714 PfamA30U 19-185 -68.100 40  PF00270.27; SGS1_YEAST/680-854; DEAD/DEAH box helicase
22-348 -13.600 14  PF06862.10; UTP25_SCHPO/187-651; Utp25, U3 small nucleolar RNA-associated SSU processome protein 25
22-688 -12.500 10  PF02399.13; OBP_VZVD/13-828; Origin of replication binding protein
215-324 -27.600 27  PF00271.29; Q9ZCQ0_RICPR/221-329; Helicase conserved C-terminal domain
335-399 -26.100 30  PF16124.3; R7J4M7_9BACT/340-402; RecQ zinc-binding
401-509 -35.200 28  PF09382.8; Q5F644_NEIG1/401-509; RQC domain
518-585 -33.000 38  PF00570.21; Q8G567_BIFLO/575-642; HRDC domain
616-704 -23.500 34  PF14493.4; C0QFE1_DESAH/739-826; Helix-turn-helix domain


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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ye Y, Godzik A. FATCAT: a web server for flexible structure comparison and structure similarity searching. Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W582-5.