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Shows best template from each database, and all templates with significant scores covering different query fragments

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# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|60680547|ref|YP_210691.1| hypothetical protein (BF1003) [Bacteroides fragilis NCTC 9343] (Range: 1-117) 117 PfamA30U 49-111 -25.200 17  PF05402.10; I3UDV1_ADVKW/25-86; Coenzyme PQQ synthesis protein D (PqqD)
2 gi|60680256|ref|YP_210400.1| hypothetical protein (BF0697) [Bacteroides fragilis NCTC 9343] (Range: 1-74) 74 PfamA30U 46-73 -7.700 21  PF09787.7; W4YU02_STRPU/423-727; Golgin subfamily A member 5
3 gi|60681449|ref|YP_211593.1| MatE family transmembrane protein (BF1960) [Bacteroides fragilis NCTC 9343] (Range: 1-447) 447 PfamA30U 13-337 -37.200 10  PF07260.9; F1Q528_DANRE/1-344; Progressive ankylosis protein (ANKH)
16-431 -12.800 11  PF03023.12; MURJ_ECOLI/28-479; MviN-like protein
4 gi|60683425|ref|YP_213569.1| 30S ribosomal protein S14 (BF3990) [Bacteroides fragilis NCTC 9343] (Range: 1-99) 99 PfamA30U 47-98 -33.700 46  PF00253.19; RS14Z_BEUC1/11-60; Ribosomal protein S14p/S29e
5 gi|60682385|ref|YP_212529.1| putative CTP pyrophosphohydrolase (BF2916) [Bacteroides fragilis NCTC 9343] (Range: 1-130) 130 PfamA30U 1-113 -31.100 27  PF00293.26; MUTT_BACSU/1-120; NUDIX domain
6 gi|60680762|ref|YP_210906.1| putative transmembrane conjugate transposon protein (BF1242) [Bacteroides fragilis NCTC 9343] (Range: 1-110) 110 PfamA30U 6-96 -64.300 72  PF13571.4; G8UJ82_TANFA/6-96; Domain of unknown function (DUF4133 topsan)
7 gi|60683330|ref|YP_213474.1| ATP-dependent protease ATP-binding subunit ClpX (BF3893) [Bacteroides fragilis NCTC 9343] (Range: 1-415) 415 PfamA30U 9-46 -18.700 44  PF06689.11; R6J2X8_9CLOT/11-48; ClpX C4-type zinc finger
52-381 -11.500 23  PF05496.10; RUVB_SOLUE/5-238; Holliday junction DNA helicase ruvB N-terminus
79-243 -12.400 22  PF01078.19; Q8EJV7_SHEON/193-396; Magnesium chelatase, subunit ChlI
8 gi|60682477|ref|YP_212621.1|(removed signalp:1-23) hypothetical protein (BF3007) [Bacteroides fragilis NCTC 9343] (Range: 24-588) 565 PfamA30U 6-447 -22.500 PF12569.6; A9SDC6_PHYPA/187-705; NMDA receptor-regulated protein 1
7-310 -22.800 12  PF13429.4; Q39U81_GEOMG/198-480; Tetratricopeptide repeat
64-328 -31.900 14  PF14938.4; B8ML21_TALSN/2-284; Soluble NSF attachment protein, SNAP
286-512 -9.500 13  PF15254.4; G1T8F1_RABIT/39-892; Coiled-coil domain-containing protein 14
507-562 -9.540 14  PF00196.17; NARP_HAEIN/147-203; Bacterial regulatory proteins, luxR family
9 gi|60681243|ref|YP_211387.1| hypothetical protein (BF1751) [Bacteroides fragilis NCTC 9343] (Range: 1-157) 157 PfamA30U 10-156 -50.500 12  PF14137.4; A6LYB2_CLOB8/32-184; Domain of unknown function (DUF4304 topsan)
10 gi|60682315|ref|YP_212459.1| hypothetical protein (BF2845) [Bacteroides fragilis NCTC 9343] (Range: 1-207) 207 PfamA30U 30-139 -7.210 14  PF06232.9; Q9LVB5_ARATH/27-152; Embryo-specific protein 3, (ATS3)
11 gi|60680924|ref|YP_211068.1| putative anti-sigma factor (BF1413) [Bacteroides fragilis NCTC 9343] (Range: 1-311) 311 PfamA30U 100-196 -29.500 21  PF04773.11; Q2YA72_NITMU/40-132; FecR protein
209-307 -25.800 20  PF16344.3; R7EIZ2_9BACE/288-388; Domain of unknown function (DUF4974 topsan)
12 gi|60683563|ref|YP_213707.1| putative SufE Fe/S-cluster-related protein (BF4142) [Bacteroides fragilis NCTC 9343] (Range: 1-142) 142 PfamA30U 11-130 -73.900 40  PF02657.13; J7QRG4_METSZ/8-134; Fe-S metabolism associated domain
13 gi|60682225|ref|YP_212369.1| putative two component system response regulator (BF2753) [Bacteroides fragilis NCTC 9343] (Range: 1-225) 225 PfamA30U 3-109 -52.300 31  PF00072.22; RSSB_ECOLI/10-121; Response regulator receiver domain
145-222 -33.700 23  PF00486.26; I0DPC2_PROSM/145-220; Transcriptional regulatory protein, C terminal
14 gi|60682801|ref|YP_212945.1| nicotinate phosphoribosyltransferase (BF3334) [Bacteroides fragilis NCTC 9343] (Range: 1-388) 388 PfamA30U 159-385 -93.900 40  PF04095.14; PNCB_NEIMB/171-398; Nicotinate phosphoribosyltransferase (NAPRTase) family
15 gi|60680875|ref|YP_211019.1| hypothetical protein (BF1359) [Bacteroides fragilis NCTC 9343] (Range: 1-245) 245 PfamA30U 10-245 -32.500 10  PF06661.9; Q2K2F2_RHIEC/43-358; VirE3
16 gi|60682029|ref|YP_212173.1| putative bifunctional CbiF/CbiG cobalamin biosynthesis protein (BF2549) [Bacteroides fragilis NCTC 9343] (Range: 1-599) 599 PfamA30U 45-126 -51.900 50  PF11760.6; R6GY19_9FIRM/35-116; Cobalamin synthesis G N-terminal
131-224 -30.300 46  PF11761.6; R6L2F4_9BACE/138-249; Cobalamin biosynthesis central region
227-389 -54.700 25  PF01890.14; K9VGP0_9CYAN/96-268; Cobalamin synthesis G C-terminus
353-559 -49.500 25  PF00590.18; Q3A6A0_PELCD/39-272; Tetrapyrrole (Corrin/Porphyrin) Methylases
17 gi|60681247|ref|YP_211391.1| hypothetical protein (BF1755) [Bacteroides fragilis NCTC 9343] (Range: 1-299) 299 PfamA30U 215-299 -11.900 10  PF17139.2; R7EHD4_9BACE/12-276; Domain of unknown function (DUF5112 topsan)
242-277 -22.500 16  PF08238.10; Q74B15_GEOSL/119-154; Sel1 repeat
18 gi|60681605|ref|YP_211749.1| hypothetical protein (BF2124) [Bacteroides fragilis NCTC 9343] (Range: 1-361) 361 PfamA30U 246-360 -7.880 18  PF15616.4; Q5NWS3_AROAE/221-349; TerY-C metal binding domain
19 gi|60681337|ref|YP_211481.1| hypothetical protein (BF1846) [Bacteroides fragilis NCTC 9343] (Range: 1-71) 71 PfamA30U 4-52 -7.020 14  PF16845.3; B9HCU3_POPTR/31-111; Aspartic acid proteinase inhibitor
20 gi|60680681|ref|YP_210825.1| hypothetical protein (BF1156) [Bacteroides fragilis NCTC 9343] (Range: 1-221) 221 PfamA30U 6-221 -12.100 PF12541.6; R6DEH5_9CLOT/2-276; Protein of unknown function (DUF3737 topsan)
101-181 -34.600 59  PF13599.4; D6D2K3_9BACE/86-166; Pentapeptide repeats (9 copies)


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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ye Y, Godzik A. FATCAT: a web server for flexible structure comparison and structure similarity searching. Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W582-5.