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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 5436next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|30260196|ref|NP_842573.1| chromosomal replication initiation protein (BA_0001) [Bacillus anthracis str. Ames] 446 PfamA30U 5-68 -16.400 20  PF11638.6; DNAA_LAWIP/5-67; DnaA N-terminal domain
111-329 -109.000 72  PF00308.16; DNAA_STRCO/317-535; Bacterial dnaA protein
356-424 -37.600 68  PF08299.9; D9QS97_ACEAZ/358-426; Bacterial dnaA protein helix-turn-helix
2 gi|30260197|ref|NP_842574.1| DNA polymerase III subunit beta (BA_0002) [Bacillus anthracis str. Ames] 379 PfamA30U 1-126 -38.500 29  PF00712.17; DPO3B_CAUCR/1-121; DNA polymerase III beta subunit, N-terminal domain
136-252 -48.900 30  PF02767.14; DPO3B_PSEPK/129-244; DNA polymerase III beta subunit, central domain
254-377 -58.800 73  PF02768.13; DPO3B_BACSU/253-376; DNA polymerase III beta subunit, C-terminal domain
3 gi|30260198|ref|NP_842575.1| hypothetical protein (BA_0003) [Bacillus anthracis str. Ames] 70 PfamA30U 4-68 -45.600 40  PF13275.4; D4IXS8_BUTFI/4-68; S4 domain
4 gi|30260199|ref|NP_842576.1| recombination protein F (BA_0004) [Bacillus anthracis str. Ames] 375 PfamA30U 1-346 -20.400 15  PF13175.4; I1YS32_PREI7/1-378; AAA ATPase domain
5 gi|30260200|ref|NP_842577.1| DNA gyrase subunit B (BA_0005) [Bacillus anthracis str. Ames] 640 PfamA30U 227-396 -86.000 48  PF00204.23; A9KS52_CLOPH/226-396; DNA gyrase B
537-635 -21.800 19  PF16898.3; K5XBZ3_PHACS/641-767; C-terminal associated domain of TOPRIM
570-629 -45.500 70  PF00986.19; M9X0E0_MANHA/738-800; DNA gyrase B subunit, carboxyl terminus
6 gi|30260201|ref|NP_842578.1| DNA gyrase subunit A (BA_0006) [Bacillus anthracis str. Ames] 823 PfamA30U 34-473 -64.800 21  PF00521.18; A0A0D1DXS4_USTMA/785-1232; DNA gyrase/topoisomerase IV, subunit A
612-657 -14.500 43  PF03989.11; GYRA_HAEIN/641-686; DNA gyrase C-terminal domain, beta-propeller
7 gi|30260202|ref|NP_842579.1| inosine 5'-monophosphate dehydrogenase (BA_0008) [Bacillus anthracis str. Ames] 487 PfamA30U 10-474 -132.000 55  PF00478.23; G0AB65_COLFT/7-472; IMP dehydrogenase / GMP reductase domain
8 gi|30260203|ref|NP_842580.1|(removed signalp:1-28) D-alanyl-D-alanine carboxypeptidase (BA_0009) [Bacillus anthracis str. Ames] 407 PfamA30U 2-256 -72.500 34  PF00768.18; DACC_ECOLI/28-266; D-alanyl-D-alanine carboxypeptidase
275-377 -22.400 21  PF07943.11; DACA_HAEIN/282-373; Penicillin-binding protein 5, C-terminal domain
9 gi|30260204|ref|NP_842581.1| pyridoxal biosynthesis lyase PdxS (BA_0010) [Bacillus anthracis str. Ames] 295 PfamA30U 7-213 -104.000 60  PF01680.15; A7SXL5_NEMVE/41-247; SOR/SNZ family
15-256 -11.200 18  PF05690.12; THIG_XANCP/11-258; Thiazole biosynthesis protein ThiG
10 gi|30260205|ref|NP_842582.1| glutamine amidotransferase subunit PdxT (BA_0011) [Bacillus anthracis str. Ames] 196 PfamA30U 6-187 -86.800 37  PF01174.17; SNO3_YEAST/7-217; SNO glutamine amidotransferase family
11 gi|30260206|ref|NP_842583.1| seryl-tRNA synthetase (BA_0012) [Bacillus anthracis str. Ames] 424 PfamA30U 1-107 -27.100 22  PF02403.20; C5WTV8_SORBI/1-114; Seryl-tRNA synthetase N-terminal domain
12 gi|30260207|ref|NP_842584.1| hypothetical protein (BA_0013) [Bacillus anthracis str. Ames] 183 PfamA30U 123-178 -8.780 12  PF06163.9; A0A070SGS2_ECOLX/1-127; Bacterial protein of unknown function (DUF977 topsan)
13 gi|30260208|ref|NP_842585.1| deoxynucleoside kinase family protein (BA_0014) [Bacillus anthracis str. Ames] 222 PfamA30U 15-215 -96.300 69  PF01712.17; DCK_BACSU/12-212; Deoxynucleoside kinase
14 gi|30260209|ref|NP_842586.1| deoxynucleoside kinase family protein (BA_0015) [Bacillus anthracis str. Ames] 211 PfamA30U 7-207 -86.900 30  PF01712.17; DCK_BACSU/12-212; Deoxynucleoside kinase
15 gi|30260210|ref|NP_842587.1| isochorismatase family protein (BA_0016) [Bacillus anthracis str. Ames] 179 PfamA30U 5-175 -58.400 19  PF00857.18; Q0KD49_CUPNH/23-199; Isochorismatase family
16 gi|30260211|ref|NP_842588.1|(removed signalp:1-24) hypothetical protein (BA_0017) [Bacillus anthracis str. Ames] 22 PfamA30U 1-21 -4.730 28  PF11478.6; TACB2_TACTR/1-42; Antimicrobial chitin binding protein tachystatin B
17 gi|30260212|ref|NP_842589.1| cytidine/deoxycytidylate deaminase zinc-binding domain-containing protein (BA_0018) [Bacillus anthracis str. Ames] 166 PfamA30U 4-151 -100.000 53  PF14437.4; D4IXV5_BUTFI/25-172; MafB19-like deaminase
18 gi|30260213|ref|NP_842590.1| DNA polymerase III subunits gamma and tau (BA_0019) [Bacillus anthracis str. Ames] 562 PfamA30U 1-224 -37.200 17  PF06068.11; RUVB2_CAEEL/17-408; TIP49 C-terminus
9-308 -18.400 12  PF03215.13; RAD24_YEAST/58-575; Rad17 cell cycle checkpoint protein
21-178 -68.000 32  PF13177.4; A5VIC8_LACRD/13-171; DNA polymerase III, delta subunit
232-358 -15.500 20  PF12169.6; Q11B01_CHESB/247-389; DNA polymerase III subunits gamma and tau domain III
19 gi|30260214|ref|NP_842591.1| hypothetical protein (BA_0020) [Bacillus anthracis str. Ames] 109 PfamA30U 13-102 -52.200 37  PF02575.14; V5SI04_9RHIZ/8-98; YbaB/EbfC DNA-binding family
20 gi|30260215|ref|NP_842592.1| recombination protein RecR (BA_0021) [Bacillus anthracis str. Ames] 198 PfamA30U 39-78 -19.200 32  PF02132.13; R6YA57_9FIRM/41-80; RecR protein
80-171 -53.400 53  PF13662.4; RECR_RHOFT/80-171; Toprim domain


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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ye Y, Godzik A. FATCAT: a web server for flexible structure comparison and structure similarity searching. Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W582-5.