current user: public

anford Burnham Prebys Medical Discovery Institute
We are hiring bioinformatics experts and software developers. Join us!

Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:

Page size:   Sort by score   Show only entries containing string:

Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 5436next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|30260196|ref|NP_842573.1| chromosomal replication initiation protein (BA_0001) [Bacillus anthracis str. Ames] 446 PDB0516 7-446 -132.000 37  2z4r_A mol:protein length:440 Chromosomal replication initiator protein dna
2 gi|30260197|ref|NP_842574.1| DNA polymerase III subunit beta (BA_0002) [Bacillus anthracis str. Ames] 379 PDB0516 1-379 -115.000 74  4tr6_A mol:protein length:380 DNA polymerase III subunit beta
3 gi|30260198|ref|NP_842575.1| hypothetical protein (BA_0003) [Bacillus anthracis str. Ames] 70 PDB0516 1-69 -39.100 23  1p9k_A mol:protein length:79 orf, hypothetical protein
4 gi|30260199|ref|NP_842576.1| recombination protein F (BA_0004) [Bacillus anthracis str. Ames] 375 PDB0516 1-373 -119.000 30  2o5v_A mol:protein length:359 DNA replication and repair protein recF
5 gi|30260200|ref|NP_842577.1| DNA gyrase subunit B (BA_0005) [Bacillus anthracis str. Ames] 640 PDB0516 1-639 -195.000 54  4juo_C mol:protein length:670 DNA topoisomerase 4 subunit B
6 gi|30260201|ref|NP_842578.1| DNA gyrase subunit A (BA_0006) [Bacillus anthracis str. Ames] 823 PDB0516 3-503 -153.000 83  4ddq_A mol:protein length:502 DNA gyrase subunit A
32-738 -131.000 36  1zvu_A mol:protein length:716 Topoisomerase IV subunit A
503-823 -71.600 36  3uc1_A mol:protein length:327 DNA gyrase subunit A
7 gi|30260202|ref|NP_842579.1| inosine 5'-monophosphate dehydrogenase (BA_0008) [Bacillus anthracis str. Ames] 487 PDB0516 2-487 -142.000 69  1zfj_A mol:protein length:491 INOSINE MONOPHOSPHATE DEHYDROGENASE
8 gi|30260203|ref|NP_842580.1|(removed signalp:1-28) D-alanyl-D-alanine carboxypeptidase (BA_0009) [Bacillus anthracis str. Ames] 407 PDB0516 1-377 -118.000 37  1xp4_A mol:protein length:379 D-alanyl-D-alanine carboxypeptidase
2-407 -109.000 25  3hum_A mol:protein length:453 Penicillin-binding protein 4
9 gi|30260204|ref|NP_842581.1| pyridoxal biosynthesis lyase PdxS (BA_0010) [Bacillus anthracis str. Ames] 295 PDB0516 2-295 -126.000 67  2zbt_A mol:protein length:297 Pyridoxal biosynthesis lyase pdxS
10 gi|30260205|ref|NP_842582.1| glutamine amidotransferase subunit PdxT (BA_0011) [Bacillus anthracis str. Ames] 196 PDB0516 1-196 -109.000 66  2nv2_B mol:protein length:204 Glutamine amidotransferase subunit pdxT
11 gi|30260206|ref|NP_842583.1| seryl-tRNA synthetase (BA_0012) [Bacillus anthracis str. Ames] 424 PDB0516 1-419 -135.000 58  2dq3_A mol:protein length:425 Seryl-tRNA synthetase
12 gi|30260207|ref|NP_842584.1| hypothetical protein (BA_0013) [Bacillus anthracis str. Ames] 183 PDB0516 19-150 -9.720 17  4lg2_A mol:protein length:146 Polymerase cofactor
13 gi|30260208|ref|NP_842585.1| deoxynucleoside kinase family protein (BA_0014) [Bacillus anthracis str. Ames] 222 PDB0516 12-213 -84.000 29  2jas_A mol:protein length:206 DEOXYGUANOSINE KINASE
14 gi|30260209|ref|NP_842586.1| deoxynucleoside kinase family protein (BA_0015) [Bacillus anthracis str. Ames] 211 PDB0516 4-205 -79.800 24  2jas_A mol:protein length:206 DEOXYGUANOSINE KINASE
15 gi|30260210|ref|NP_842587.1| isochorismatase family protein (BA_0016) [Bacillus anthracis str. Ames] 179 PDB0516 3-176 -80.300 29  3eef_A mol:protein length:182 N-carbamoylsarcosine amidase related protein
16 gi|30260211|ref|NP_842588.1|(removed signalp:1-24) hypothetical protein (BA_0017) [Bacillus anthracis str. Ames] 22 PDB0516 1-21 -4.730 28  2dcw_A mol:protein length:42 Tachystatin-B2
17 gi|30260212|ref|NP_842589.1| cytidine/deoxycytidylate deaminase zinc-binding domain-containing protein (BA_0018) [Bacillus anthracis str. Ames] 166 PDB0516 2-158 -104.000 63  2b3j_A mol:protein length:159 tRNA adenosine deaminase
18 gi|30260213|ref|NP_842590.1| DNA polymerase III subunits gamma and tau (BA_0019) [Bacillus anthracis str. Ames] 562 PDB0516 1-243 -92.600 54  1njf_A mol:protein length:250 DNA polymerase III subunit gamma
1-357 -91.400 43  3glf_B mol:protein length:395 DNA polymerase III subunit tau
22-442 -11.900 11  4xgc_D mol:protein length:459 Origin recognition complex subunit 4
431-561 -10.000 12  4iqj_M mol:protein length:177 C-terminal domain of the DNA polymerase III s
19 gi|30260214|ref|NP_842591.1| hypothetical protein (BA_0020) [Bacillus anthracis str. Ames] 109 PDB0516 2-109 -57.300 56  1ybx_A mol:protein length:143 Conserved hypothetical protein
20 gi|30260215|ref|NP_842592.1| recombination protein RecR (BA_0021) [Bacillus anthracis str. Ames] 198 PDB0516 2-198 -108.000 64  3vdp_A mol:protein length:212 Recombination protein recR

FFAS is supported by the NIH grant R01-GM087218-01
1 1 0 0 1 4   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Friedberg I, Nika K, Tautz L, Saito K, Cerignoli F, Friedberg I, Godzik A, Mustelin T. Identification and characterization of DUSP27, a novel dual-specific protein phosphatase. FEBS Lett. 2007 May 29;581(13):2527-33. Epub 2007 Apr 30.