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Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:

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Shows best template from each database, and all templates with significant scores covering different query fragments

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# Query Length Result vs. Range Score %id Covered by template(s)
1 CAJ09955.1 ATP/GTP-binding site motif A (P-loop):Bacterial chromosomal replication initiator protein, DnaA:AAA ATPase:Neutral zinc metal [Brucella abortus 2308] 496 H.sapiens 113-458 -10.100 13  sp|O75351|VPS4B_HUMAN Vacuolar protein sorting-associated protein 4B OS=Homo sapiens GN=VPS4B PE=1 SV=2
167-495 -11.800 14  sp|Q99741|CDC6_HUMAN Cell division control protein 6 homolog OS=Homo sapiens GN=CDC6 PE=1 SV=1
2 CAJ09958.1 DNA polymerase III, beta chain:Inorganic pyrophosphatase [Brucella abortus 2308] 397 H.sapiens 91-366 -8.130 12  sp|O60671|RAD1_HUMAN Cell cycle checkpoint protein RAD1 OS=Homo sapiens GN=RAD1 PE=1 SV=1
3 CAJ09959.1 RecF protein:ATP/GTP-binding site motif A (P-loop):Aldehyde dehydrogenase:SMC protein, N-terminal:AAA ATPase [Brucella abortus 2308] 384 H.sapiens 14-266 -21.000 10  sp|Q92878|RAD50_HUMAN DNA repair protein RAD50 OS=Homo sapiens GN=RAD50 PE=1 SV=1 (Range: 1-300)
15-306 -18.700 12  sp|Q14683|SMC1A_HUMAN Structural maintenance of chromosomes protein 1A OS=Homo sapiens GN=SMC1A PE=1 SV=2 (Range: 1-300)
152-384 -12.400 17  sp|Q9UQE7|SMC3_HUMAN Structural maintenance of chromosomes protein 3 OS=Homo sapiens GN=SMC3 PE=1 SV=2 (Range: 901-1200)
4 CAJ09960.1 NAD binding site:UBA/THIF-type NAD/FAD binding fold:Aromatic-ring hydroxylase [Brucella abortus 2308] 260 H.sapiens 2-260 -102.000 45  sp|O95396|MOCS3_HUMAN Adenylyltransferase and sulfurtransferase MOCS3 OS=Homo sapiens GN=MOCS3 PE=1 SV=1
5 CAJ09961.1 Pyridine nucleotide-disulphide oxidoreductase, class I:D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain [Brucella abortus 2308] 318 H.sapiens 61-313 -44.400 27  sp|Q9UBQ7|GRHPR_HUMAN Glyoxylate reductase/hydroxypyruvate reductase OS=Homo sapiens GN=GRHPR PE=1 SV=1
6 CAJ09962.1 ATP/GTP-binding site motif A (P-loop):ABC transporter:AAA ATPase [Brucella abortus 2308] 541 H.sapiens 6-506 -53.200 16  sp|P61221|ABCE1_HUMAN ATP-binding cassette sub-family E member 1 OS=Homo sapiens GN=ABCE1 PE=1 SV=1
273-541 -28.300 19  sp|Q8NE71|ABCF1_HUMAN ATP-binding cassette sub-family F member 1 OS=Homo sapiens GN=ABCF1 PE=1 SV=2 (Range: 301-600)
7 CAJ09963.1 Binding-protein-dependent transport systems inner membrane component [Brucella abortus 2308] 379 H.sapiens 178-364 -8.180 14  sp|P55064|AQP5_HUMAN(removed signalp:1-32) Aquaporin-5 OS=Homo sapiens GN=AQP5 PE=1 SV=1
8 CAJ09964.1 Binding-protein-dependent transport systems inner membrane component [Brucella abortus 2308] 365 H.sapiens 172-325 -7.780 10  sp|Q7Z7M1|GP144_HUMAN Probable G-protein coupled receptor 144 OS=Homo sapiens GN=GPR144 PE=2 SV=1 (Range: 751-963)
9 CAJ09965.1 Bacterial extracellular solute-binding protein, family 5 [Brucella abortus 2308] 604 H.sapiens 86-423 -6.310 14  sp|Q9NZV5|SELN_HUMAN Selenoprotein N OS=Homo sapiens GN=SEPN1 PE=1 SV=5
10 CAJ09966.1 Bacterial extracellular solute-binding protein, family 5 [Brucella abortus 2308] 622 H.sapiens 214-483 -6.080 14  sp|Q9NXL9|MCM9_HUMAN DNA replication licensing factor MCM9 OS=Homo sapiens GN=MCM9 PE=1 SV=3 (Range: 151-450)
11 CAJ09967.1 conserved hypothetical protein [Brucella abortus 2308] 107 H.sapiens 13-105 -7.660 18  sp|Q9UP38|FZD1_HUMAN Frizzled-1 OS=Homo sapiens GN=FZD1 PE=1 SV=2 (Range: 451-647)
12 CAJ09968.1 conserved hypothetical protein [Brucella abortus 2308] 66 H.sapiens 9-36 -7.350 25  sp|Q8WWK9|CKAP2_HUMAN Cytoskeleton-associated protein 2 OS=Homo sapiens GN=CKAP2 PE=1 SV=1 (Range: 151-450)
13 CAJ09969.1 conserved hypothetical protein [Brucella abortus 2308] 116 H.sapiens 44-111 -7.430 17  sp|Q5VYP0|F75A3_HUMAN Protein FAM75A3 OS=Homo sapiens GN=FAM75A3 PE=2 SV=1 (Range: 1-300)
14 CAJ09971.1 conserved domain protein [Brucella abortus 2308] 66 H.sapiens 20-66 -8.020 14  sp|Q9Y233|PDE10_HUMAN cAMP and cAMP-inhibited cGMP 3`,5`-cyclic phosphodiesterase 10A OS=Homo sapiens GN=PDE10A PE=1 SV=1 (Range: 301-600)
15 CAJ09972.1 Enoyl-CoA hydratase/isomerase [Brucella abortus 2308] 264 H.sapiens 7-262 -82.800 24  sp|Q96DC8|ECHD3_HUMAN Enoyl-CoA hydratase domain-containing protein 3, mitochondrial OS=Homo sapiens GN=ECHDC3 PE=1 SV=2
16 CAJ09973.1 HMG-CoA lyase-like [Brucella abortus 2308] 287 H.sapiens 1-287 -128.000 50  sp|P35914|HMGCL_HUMAN(removed signalp:1-23) Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Homo sapiens GN=HMGCL PE=1 SV=2
17 CAJ09974.1 Biotin/lipoyl attachment:Biotin-requiring enzyme, attachment site:Carbamoyl-phosphate synthase L chain, ATP-binding:Carbamoyl [Brucella abortus 2308] 673 H.sapiens 5-271 -90.100 59  sp|Q96RQ3|MCCA_HUMAN Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial OS=Homo sapiens GN=MCCC1 PE=1 SV=3 (Range: 1-300)
122-423 -96.800 60  sp|Q96RQ3|MCCA_HUMAN Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial OS=Homo sapiens GN=MCCC1 PE=1 SV=3 (Range: 151-450)
272-551 -68.600 40  sp|Q96RQ3|MCCA_HUMAN Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial OS=Homo sapiens GN=MCCC1 PE=1 SV=3 (Range: 301-600)
340-629 -43.300 16  sp|O00763|ACACB_HUMAN(removed signalp:1-24) Acetyl-CoA carboxylase 2 OS=Homo sapiens GN=ACACB PE=1 SV=3 (Range: 601-900)
424-673 -41.000 24  sp|Q96RQ3|MCCA_HUMAN Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial OS=Homo sapiens GN=MCCC1 PE=1 SV=3 (Range: 451-725)
18 CAJ09975.1 Carboxyl transferase family [Brucella abortus 2308] 535 H.sapiens 1-535 -189.000 64  sp|Q9HCC0|MCCB_HUMAN(removed signalp:1-15) Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial OS=Homo sapiens GN=MCCC2 PE=1 SV=1
19 CAJ09978.1 unnamed protein product [Brucella abortus 2308] 127 H.sapiens 8-124 -13.300 10  sp|Q12766|HMGX3_HUMAN HMG domain-containing protein 3 OS=Homo sapiens GN=HMGXB3 PE=2 SV=2 (Range: 751-1050)
20 CAJ09979.1 ATP/GTP-binding site motif A (P-loop):EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase):3-phosphoshikimate 1-carbo [Brucella abortus 2308] 450 H.sapiens 129-432 -6.420 14  sp|Q6KC79|NIPBL_HUMAN Nipped-B-like protein OS=Homo sapiens GN=NIPBL PE=1 SV=2 (Range: 151-450)


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ye Y, Godzik A. FATCAT: a web server for flexible structure comparison and structure similarity searching. Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W582-5.