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Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:

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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 4334next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|16082692|ref|NP_395138.1| putative transposase (YPCD1.01) [Yersinia pestis CO92] 340 JCSG0516 13-127 -15.300 20  SP18059A ZP_02431199.1 410310 Selected-2009-11-12
14-326 -11.500 GD14004A RER070207002105 388710 Selected-2007-09-21
2 gi|16082693|ref|NP_395139.1| transposase/IS protein (YPCD1.02) [Yersinia pestis CO92] 259 JCSG0516 1-243 -9.620 15  MJ8919A YP_351948.1 403413 Purified-2009-09-04
48-243 -24.800 20  NT12373A YP_804196.1 378766 Purified-2007-10-16
3 gi|16082696|ref|NP_395142.1| secretion chaperone (YPCD1.05c) [Yersinia pestis CO92] 130 JCSG0516 1-130 -39.200 10  FR15113A YP_009166.1 391933 Crystal|NMR-2009-04-30
4 gi|16082697|ref|NP_395143.1| putative outer membrane virulence protein (YPCD1.06) [Yersinia pestis CO92] 219 JCSG0516 141-217 -5.620 SC.B20974C YP_103213.1 428467 Selected-2013-01-04
5 gi|16082698|ref|NP_395144.1| hypothetical protein (YPCD1.07) [Yersinia pestis CO92] 98 JCSG0516 42-73 -7.180 25  SP18382A NP_371220.1 413717 Purified-2010-09-29
6 gi|16082699|ref|NP_395145.1| hypothetical protein (YPCD1.08c) [Yersinia pestis CO92] 99 JCSG0516 4-94 -6.160 11  RH10496C ZP_02078944.1 416275 Selected-2009-12-04
7 gi|40548796|ref|NP_395146.2| hypothetical protein (YPCD1.09c) [Yersinia pestis CO92] 80 JCSG0516 3-77 -36.200 30  PD03693I MMAG_12JAN01_CONTIG3876_REVISED_GENE3789 366510 Purified-2006-04-03
8 gi|16082702|ref|NP_395148.1| plasmid-partitioning protein (YPCD1.12c) [Yersinia pestis CO92] 320 JCSG0516 107-213 -11.400 15  RH14964A NP_842531.1 416114 Selected-2009-12-04
9 gi|16082703|ref|NP_395149.1| plasmid-partitioning protein SopA (YPCD1.13c) [Yersinia pestis CO92] 388 JCSG0516 2-387 -98.000 26  MJ12015E NP_436589.1 403711 Purified-2009-09-18
10 gi|40548797|ref|NP_954989.1| hypothetical protein (YPCD1.14n) [Yersinia pestis CO92] 65 JCSG0516 2-64 -14.300 17  GD14004A RER070207002105 388710 Selected-2007-09-21
11 gi|16082705|ref|NP_395151.1| hypothetical protein (YPCD1.15c) [Yersinia pestis CO92] 152 JCSG0516 1-152 -25.900 GD14004A RER070207002105 388710 Selected-2007-09-21
12 gi|16082706|ref|NP_395152.1| hypothetical protein (YPCD1.16c) [Yersinia pestis CO92] 107 JCSG0516 7-107 -24.400 11  SP17613A YP_975059.1 412345 Purified-2010-09-29
13 gi|16082708|ref|NP_395154.1| Yop targeting protein (YPCD1.19c) [Yersinia pestis CO92] 182 JCSG0516 45-130 -8.740 19  SC.B20974D YP_110283.1 428517 Selected-2013-01-04
14 gi|16082709|ref|NP_395155.1| Yop targeted effector (YPCD1.20) [Yersinia pestis CO92] 322 JCSG0516 1-290 -12.600 12  SP18431A ZP_02993239.1 410515 Purified-2010-11-20
15 gi|16082710|ref|NP_395156.1| YopT chaperone (YPCD1.21) [Yersinia pestis CO92] 132 JCSG0516 1-132 -29.500 10  FR15113A YP_009166.1 391933 Crystal|NMR-2009-04-30
16 gi|16082711|ref|NP_395157.1| hypothetical protein (YPCD1.22c) [Yersinia pestis CO92] 129 JCSG0516 5-119 -7.730 12  TM1800 TM1800 283653 Purified-2001-12-11
17 gi|16082712|ref|NP_395158.1| hypothetical protein (YPCD1.23) [Yersinia pestis CO92] 139 JCSG0516 11-101 -8.520 20  SP5917A YP_001712366.1 406310 Purified-2010-09-29
18 gi|16082715|ref|NP_395161.1| secreted effector protein (YPCD1.26c) [Yersinia pestis CO92] 409 JCSG0516 1-397 -49.800 18  SP16667C ZP_03460298.1 407555 Crystal|NMR-2011-11-13
19 gi|16082716|ref|NP_395162.1| secreted effector protein (YPCD1.28c) [Yersinia pestis CO92] 306 JCSG0516 24-303 -12.200 SP13496O NP_810425.1 408730 Selected-2009-11-12
70-297 -14.100 SP17722H YP_002938876.1 411110 Selected-2009-11-12
159-301 -17.600 SP18791A YP_001271634.1 411947 Selected-2009-11-12
20 gi|16082717|ref|NP_395163.1| secreted effector protein (YPCD1.29c) [Yersinia pestis CO92] 401 JCSG0516 149-353 -8.920 13  SP2600AD YP_794564.1 411897 Selected-2009-11-12


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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.