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Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:

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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 1872next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 TM0001 TM0001 281882 Purified-2001-08-24 41 HGM_OVER 3-27 -1.750 20  HGC00579 gi|163284429|dbj|BABD01026259.1|2.0 TMP00679;
2 TM0002 TM0002 281883 Purified-2001-08-29 41 HGM_OVER 4-41 -1.880 PB015954 Q6WBB3_BIFBR/1-225 PB015954; Pfam-B_15954;
3 TM0003 TM0003 281884 Purified-2001-12-06 40 HGM_OVER 4-38 -2.460 17  PB002104 Q72PH8_LEPIC/1-220 PB002104; Pfam-B_2104;
4 TM0004 TM0004 281885 Purified-2004-07-19 31 HGM_OVER 2-28 -1.280 11  PB007740 Q89YT2_BACTN/1-193 PB007740; Pfam-B_7740;
5 TM0005 TM0005 281886 Purified-2001-01-30 650 HGM_OVER 1-166 -29.700 16  HGC00787 gi|162657578|dbj|BAAX01002027.1|2.0 TMP01033;
6 TM0006 TM0006 281887 Diffraction|HSQC-2004-07-13 345 HGM_OVER 193-243 -5.030 PB009661 _Gut.Meta.Jp.0000785_ gi|162567239|dbj|BAAU01000237.1||2 (- 3549:4008~0 complete)
7 TM0007 TM0007 281888 Purified-2004-07-19 438 HGM_OVER 3-101 -4.860 17  HGC00962 gi|162759780|dbj|BAAZ01005693.1|3.0 TMP01305;
8 TM0008 TM0008 281889 Crystal|NMR-2001-04-01 224 HGM_OVER 123-206 -2.710 16  PB031792 gi|154174791|ref|YP_001409041.1| flavodoxin family protein [Campylobacter curvus 525.92]gi|112804021|gb|EAU01365.1| flavodoxin family protein [Campylobacter curvus 525.92]
9 TM0009 TM0009 281890 Purified-2001-02-14 142 HGM_OVER 13-140 -4.220 PB007740 Q89YT2_BACTN/1-193 PB007740; Pfam-B_7740;
10 TM0010 TM0010 281891 Purified-2005-03-03 607 HGM_OVER 489-589 -2.930 16  HGC00991 gi|163600283|dbj|BABF01000984.1|3.0 TMP01348;
11 TM0011 TM0011 281892 Purified-2004-02-02 128 HGM_OVER 2-121 -4.260 15  PB027778 Q5LHJ0_BACFN/1-110 PB027778; Pfam-B_27778;
12 TM0012 TM0012 281893 Purified-2001-08-29 176 HGM_OVER 27-175 -4.700 12  HGC00164 gi|163636082|dbj|BABG01000191.1|4.0 TMP00833;
13 TM0013 TM0013 281894 Purified-2001-08-24 253 HGM_OVER 27-127 -2.960 13  PB001572 gi|163816107|ref|ZP_02207475.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]gi|158448527|gb|EDP25522.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]
14 TM0014 TM0014 281895 Purified-2001-01-30 278 HGM_OVER 8-160 -5.560 15  PB202086 Q8G498_BIFLO/2-200 PB202086; Pfam-B_202086;
15 TM0015 TM0015 281896 PDB-2007-09-14 192 HGM_OVER 41-182 -2.670 12  PB007147 Q11UU2_CYTH3/1-245 PB007147; Pfam-B_7147;
16 TM0016 TM0016 281897 Purified-2001-08-24 101 HGM_OVER 39-91 -4.220 18  PB001030 Q6D4H5_ERWCT/1-146 PB001030; Pfam-B_1030;
17 TM0017 TM0017 281898 Purified-2003-03-05 394 HGM_OVER 240-363 -2.860 10  PB007147 Q11UU2_CYTH3/1-245 PB007147; Pfam-B_7147;
18 TM0018 TM0018 281899 Purified-2001-08-24 324 HGM_OVER 49-241 -4.400 HGC00024 gi|162813637|dbj|BABA01031072.1|2.0 TMP01508;
19 TM0019 TM0019 281900 Crystal|NMR-2004-03-31 256 HGM_OVER 5-104 -3.390 17  PB012991 Q2RHT0_MOOTA/1-175 PB012991; Pfam-B_12991;
20 TM0020 TM0020 281901 Purified-2001-08-24 127 HGM_OVER 24-95 -8.280 PB048420 Q64S71_BACFR/1-165 PB048420; Pfam-B_48420;


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Friedberg I, Jaroszewski L, Ye Y, Godzik A. The interplay of fold recognition and experimental structure determination in structural genomics. Curr Opin Struct Biol. 2004 Jun;14(3):307-12.