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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 4946next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|16758994|ref|NP_454611.1| thr operon leader peptide (STY0001) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 21 VFDB 1-17 -3.690 23  VFG000955(gi:19746911) (emm) M18 protein precursor [M protein (VF0242)] [Streptococcus pyogenes MGAS8232]
2 gi|16758995|ref|NP_454612.1| bifunctional aspartokinase I/homeserine dehydrogenase I (STY0002) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 820 VFDB 196-752 -6.190 12  VFG002074(gi:15595286) (hsiG1) type VI secretion system hcp secretion island protein HsiG1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
3 gi|16758996|ref|NP_454613.1| homoserine kinase (STY0003) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 309 VFDB 1-308 -25.400 16  VFG001953(gi:15792743) (hddA) D-glycero-D-manno-heptose 7-phosphate kinase [Capsule (VF0323)] [Campylobacter jejuni subsp. jejuni NCTC 11168]
4 gi|16758997|ref|NP_454614.1| threonine synthase (STY0004) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 428 VFDB 29-254 -4.490 11  VFG041341(gi:52842733) (lpg2525) Dot/Icm type IV secretion system effector [Dot/Icm (SS047)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
5 gi|16758998|ref|NP_454615.1| hypothetical protein (STY0005) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 257 VFDB 110-218 -5.740 13  VFG002423(gi:151222088) (scn) complement inhibitor SCIN [SCIN (VF0425)] [Staphylococcus aureus subsp. aureus str. Newman]
6 gi|16758999|ref|NP_454616.1| putative amino-acid transport protein (STY0006) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 476 VFDB 16-295 -4.500 12  VFG001850(gi:52842892) (dotA) Dot/Icm type IV secretion system protein DotA [Dot/Icm (VF0156)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
7 gi|16759000|ref|NP_454617.1| transaldolase B (STY0007) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 317 VFDB 20-251 -8.060 12  VFG043390(gi:15646189) (pdxJ) pyridoxine 5`-phosphate synthase [Pse5Ac7Ac (AI150)] [Helicobacter pylori 26695]
8 gi|16759001|ref|NP_454618.1| molybdenum cofactor biosynthesis protein MogA (STY0008) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 196 VFDB 46-146 -6.140 16  VFG002532(gi:53720917) (cheY1) chemotaxis two-component response regulator CheY1 [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
9 gi|16759002|ref|NP_454619.1| hypothetical protein (STY0009) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 188 VFDB 45-188 -5.790 13  VFG002151(gi:15605597) (copB2) Type III secretion system translocator CopB2 [TTSS (VF0344)] [Chlamydia trachomatis D/UW-3/CX]
10 gi|16759003|ref|NP_454620.1| hypothetical protein (STY0010) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 237 VFDB 1-166 -5.930 13  VFG006592(gi:15645645) (fliM) flagellar motor switch protein FliM [Pse5Ac7Ac (AI150)] [Helicobacter pylori 26695]
11 gi|16759004|ref|NP_454621.1|(removed signalp:1-23) hypothetical protein (STY0011) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 111 VFDB 28-97 -5.220 10  VFG000951(gi:21910837) (spea) streptococcal exotoxin A precursor - phage associated [Spes (VF0248)] [Streptococcus pyogenes MGAS315]
12 gi|16759005|ref|NP_454622.1| molecular chaperone DnaK (STY0012) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 638 VFDB 3-404 -9.070 14  VFG010479(gi:52841162) (pilM) type IV pilus inner membrane platform protein PilM [type IV pili (AI111)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
13 gi|16759006|ref|NP_454623.1| chaperone protein DnaJ (STY0013) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 379 VFDB 4-339 -4.730 15  VFG001218(gi:15600233) (pilQ) type 4 fimbrial biogenesis protein PilQ [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
14 gi|16759007|ref|NP_454624.1| putative regulatory protein (STY0014) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 315 VFDB 7-314 -40.600 11  VFG000441(gi:17233493) (spvR) Salmonella plasmid virulence: regulation of spv operon, lysR family [Spv (VF0107)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
15 gi|16759008|ref|NP_454625.1| hypothetical protein (STY0015) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 114 VFDB 1-61 -5.540 VFG006167(gi:15676786) (pilX) type IV pilus minor pilin PilX [Type IV pili (CVF189)] [Neisseria meningitidis MC58]
16 gi|16759009|ref|NP_454626.1| hypothetical protein (STY0016) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 177 VFDB 3-121 -6.350 15  VFG000823(gi:15804240) (etgA) T3SS-associated peptidoglycan lytic enzyme [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
17 gi|16759010|ref|NP_454627.1| hypothetical protein (STY0017) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 147 VFDB 1-129 -41.900 16  VFG002471(gi:53722574) (bprP) regulatory protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
18 gi|16759011|ref|NP_454628.1| putative chitinase (STY0018) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 699 VFDB 163-641 -6.380 12  VFG001378(gi:15903579) (nanA) neuraminidase A [Neuraminidase (VF0148)] [Streptococcus pneumoniae R6]
19 gi|16759012|ref|NP_454629.1| hypothetical protein (STY0019) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 383 VFDB 11-383 -14.300 10  VFG043510(gi:29376424) (fss3) Enterococcus faecalis surface protein Fss3, fibrinogen binding protein [Fibrinogen binding protein (AI273)] [Enterococcus faecalis V583]
20 gi|16759013|ref|NP_454630.1| hypothetical protein (STY0020) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 620 VFDB 10-183 -5.040 15  VFG001281(gi:21282247) (sdrE) Ser-Asp rich fibrinogen-binding bone sialoprotein-binding protein [SDr (VF0019)] [Staphylococcus aureus subsp. aureus MW2]


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.