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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 36422next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 4E14 Entity 1(prereleased) 303 PfamA26U 6-300 -26.100 PF05448.7; Q9K5F2_BACPU/1-315; Acetyl xylan esterase (AXE1)
65-299 -37.700 10  PF12740.2; C0PR35_PICSI/37-294; Chlorophyllase enzyme
85-283 -52.100 15  PF07859.8; O66374_ACEPA/83-292; alpha/beta hydrolase fold
2 2LAA Entity 1(prereleased) 104 PfamA26U 4-81 -30.100 17  PF03423.8; Q8W1P1_ORYSA/508-599; Carbohydrate binding domain (family 25)
3 2LAB Entity 1(prereleased) 104 PfamA26U 4-81 -29.600 16  PF03423.8; Q8W1P1_ORYSA/508-599; Carbohydrate binding domain (family 25)
4 3PJH Entity 1(prereleased) 114 PfamA26U 10-93 -19.300 12  PF02758.11; IFI4_MOUSE/6-84; PAAD/DAPIN/Pyrin domain
5 2L6F Entity 1(prereleased) 215 PfamA26U 2-133 -53.400 50  PF03623.8; Q4RY69_TETNG/821-958; Focal adhesion targeting region
6 2L6H Entity 1(prereleased) 180 PfamA26U 2-132 -69.500 51  PF03623.8; Q4RY69_TETNG/821-958; Focal adhesion targeting region
7 2L6W Entity 1(prereleased) 39 PfamA26U 15-39 -8.210 28  PF07435.6; Q8YA70_LISMO/5-440; YycH protein
8 2L6V Entity 1(prereleased) 109 PfamA26U 18-98 -12.100 14  PF14277.1; C0F0R6_9FIRM/9-173; Domain of unknown function (DUF4364 topsan)
9 3Q4E Entity 2(prereleased) 69 PfamA26U 43-66 -7.290 25  PF09394.5; Q4DY71_TRYCR/14-109; Chagasin family peptidase inhibitor I42
10 3Q4E Entity 1(prereleased) 546 PfamA26U 11-366 -16.900 PF06873.6; Q22YK2_TETTH/1-399; Cell surface immobilisation antigen SerH
76-517 -38.200 11  PF02335.10; NRFA_BACFN/56-493; Cytochrome c552
141-411 -63.900 78  PF13447.1; Q2YA36_NITMU/164-434; Seven times multi-haem cytochrome CxxCH
11 3Q6O Entity 1(prereleased) 131 PfamA26U 13-124 -52.800 18  PF00085.15; PDIA4_MOUSE/56-159; Thioredoxin
12 3Q8J Entity 1(prereleased) 37 PfamA26U 8-36 -4.940 17  PF12894.2; B6GWF8_PENCW/7-55; Anaphase-promoting complex subunit 4 WD40 domain
13 3QDD Entity 1(prereleased) 237 PfamA26U 46-159 -20.500 19  PF13589.1; A5G4D8_GEOUR/22-165; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
14 3QD9 Entity 1(prereleased) 470 PfamA26U 2-416 -38.200 PF01216.12; CASQ1_HUMAN/5-390; Calsequestrin
24-133 -45.600 17  PF00085.15; PDIA4_MOUSE/56-159; Thioredoxin
15 3Q9R Entity 1(prereleased) 612 PfamA26U 8-91 -44.900 100  PF02922.13; GLGB_ECOLI/124-207; Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
78-603 -12.100 11  PF13199.1; C9L2G8_9BACE/41-584; Glycosyl hydrolase family 66
157-460 -13.500 17  PF00128.19; MALT_AEDAE/44-406; Alpha amylase, catalytic domain
512-610 -43.200 24  PF02806.13; GLGB_CHLPN/621-718; Alpha amylase, C-terminal all-beta domain
16 3QB7 Entity 1(prereleased) 132 PfamA26U 4-128 -60.400 58  PF00727.13; A7LBR6_BISBO/25-133; Interleukin 4
17 3QB7 Entity 2(prereleased) 203 PfamA26U 2-90 -26.600 15  PF09067.5; Q6UAP7_TETNG/33-133; Erythropoietin receptor, ligand binding
91-189 -29.000 18  PF01108.12; I10R2_MOUSE/5-100; Tissue factor
18 2LIF Entity 1(prereleased) 27 PfamA26U 3-22 -15.100 75  PF01542.13; POLG_HCVTW/116-190; Hepatitis C virus core protein
19 3QL8 Entity 1(prereleased) 306 PfamA26U 12-294 -50.100 29  PF00069.20; KS6A1_MOUSE/407-664; Protein kinase domain
20 3QKN Entity 1(prereleased) 321 PfamA26U 40-276 -103.000 36  PF00102.22; O82656_ARATH/87-325; Protein-tyrosine phosphatase


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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Jaroszewski L, Li W, Godzik A. In search for more accurate alignments in the twilight zone. Protein Sci. 2002 Jul;11(7):1702-13.