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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 689next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|13507740|ref|NP_109689.1| DNA polymerase III beta subunit MPN001 [Mycoplasma pneumoniae M129] 380 VFDB 246-333 -3.560 11  VFG001878(gi:52842095) (lspL) general secretion pathway protein L [<
2 gi|13507741|ref|NP_109690.1| DnaJ domain-containing protein MPN002 [Mycoplasma pneumoniae M129] 309 VFDB 11-58 -6.400 22  VFG002034(gi:13508191) (hmw3) cytadherence accessory protein HMW3 [Cytadherence organelle (VF0330)] [Mycoplasma pneumoniae M129]
3 gi|13507742|ref|NP_109691.1| DNA gyrase subunit B MPN003 [Mycoplasma pneumoniae M129] 650 VFDB 3-546 -6.520 10  VFG000434(gi:17233482) (pefC) plasmid-encoded fimbriae usher protein PefC [Pef (VF0104)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
4 gi|13507743|ref|NP_109692.1| DNA gyrase subunit A MPN004 [Mycoplasma pneumoniae M129] 839 VFDB 52-644 -7.190 12  VFG000079(gi:16802278) (clpC) endopeptidase Clp ATP-binding chain C [ClpC (VF0072)] [Listeria monocytogenes EGD-e]
5 gi|13507744|ref|NP_109693.1| seryl-tRNA synthetase MPN005 [Mycoplasma pneumoniae M129] 420 VFDB 1-244 -11.600 12  VFG045487(gi:52840451) (ravF) Dot/Icm type IV secretion system effector RavF [Dot/Icm (VF0156)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
6 gi|13507745|ref|NP_109694.1| thymidylate kinase MPN006 [Mycoplasma pneumoniae M129] 210 VFDB 2-202 -9.530 13  VFG001988(gi:15792733) (cysC) adenylylsulfate kinase [Capsule (VF0323)] [Campylobacter jejuni subsp. jejuni NCTC 11168]
7 gi|13507746|ref|NP_109695.1| DNA polymerase III subunit delta' MPN007 [Mycoplasma pneumoniae M129] 253 VFDB 1-194 -13.200 VFG002380(gi:15611004) (eccA1) ESX-1 type VII secretion system AAA+ ATPase EccA1 [ESX-1 (VF0315)] [Mycobacterium tuberculosis H37Rv]
1-238 -13.100 VFG002401(gi:15608935) (eccA5) ESX-5 type VII secretion system AAA+ ATPase EccA5 [ESX-5 (VF0402)] [Mycobacterium tuberculosis H37Rv]
8 gi|13507747|ref|NP_109696.1| tRNA modification GTPase TrmE MPN008 [Mycoplasma pneumoniae M129] 442 VFDB 218-361 -9.240 25  VFG001859(gi:52842863) (feoB) ferrous iron transporter B [FeoAB (VF0160)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
9 gi|13507748|ref|NP_109697.1| hydrolase MPN009 [Mycoplasma pneumoniae M129] 261 VFDB 3-260 -7.920 VFG001351(gi:22537332) (cpsB) CpsB phosphatase [Capsule (VF0274)] [Streptococcus agalactiae 2603V/R]
10 gi|13507749|ref|NP_109698.1| hypothetical protein MPN010 [Mycoplasma pneumoniae M129] 131 VFDB 57-127 -6.070 VFG045501(gi:52841161) (ravI) Dot/Icm type IV secretion system effector RavI [Dot/Icm (VF0156)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
11 gi|13507750|ref|NP_109699.1|(removed signal:1-26) hypothetical protein MPN011 [Mycoplasma pneumoniae M129] 205 VFDB 8-133 -6.140 VFG000750(gi:215276195) (bfpG) BFP biogenesis protein BfpG [BFP (VF0174)] [Escherichia coli O127:H6 str. E2348/69]
12 gi|13507751|ref|NP_109700.1|(removed signal:1-21) hypothetical protein MPN012 [Mycoplasma pneumoniae M129] 214 VFDB 2-135 -5.330 19  VFG045510(gi:52841345) (ravN) Dot/Icm type IV secretion system effector RavN [Dot/Icm (VF0156)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
13 gi|13507752|ref|NP_109701.1| hypothetical protein MPN013 [Mycoplasma pneumoniae M129] 257 VFDB 2-155 -18.900 15  VFG001283(gi:21284150) (fnbA) fibronectin-binding protein A [FnBPs (VF0010)] [Staphylococcus aureus subsp. aureus MW2]
2-257 -16.200 VFG000337(gi:16272928) (iga1) immunoglobin A1 protease [IgA1 protease (VF0045)] [Haemophilus influenzae Rd KW20]
27-132 -26.800 17  VFG002036(gi:13508192) (p30/p32) 30K adhesin-related protein [Cytadherence organelle (VF0330)] [Mycoplasma pneumoniae M129]
14 gi|13507753|ref|NP_109702.1| hypothetical protein MPN014 [Mycoplasma pneumoniae M129] 212 VFDB 5-209 -8.660 15  VFG045552(gi:52842203) (lpg1986) Dot/Icm type IV secretion system effector [Dot/Icm (VF0156)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
15 gi|13507754|ref|NP_109703.1| hypothetical protein MPN015 [Mycoplasma pneumoniae M129] 285 VFDB 80-267 -5.990 13  VFG001966(gi:15792756) (Cj1438c) sugar transferase [Capsule (VF0323)] [Campylobacter jejuni subsp. jejuni NCTC 11168]
16 gi|13507755|ref|NP_109704.1| ribosomal S6 modification protein MPN016 [Mycoplasma pneumoniae M129] 288 VFDB 194-285 -5.060 VFG002249(gi:49476210) (trwN) Trw type IV secretion sysmtem trwN protein [Trw type IV secretion system (VF0372)] [Bartonella henselae str. Houston-1]
17 gi|13507756|ref|NP_109705.1| 5,10-methylene-tetrahydrofolate dehydrogenase MPN017 [Mycoplasma pneumoniae M129] 269 VFDB 138-235 -5.190 18  VFG000934(gi:26246575) (entA) 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
18 gi|13507757|ref|NP_109706.1|(removed signal:1-25) transport ATP-binding protein MPN018 [Mycoplasma pneumoniae M129] 598 VFDB 3-592 -79.800 20  VFG001269(gi:33591935) (cyaB) cyclolysin secretion ATP-binding protein [Cya (VF0028)] [Bordetella pertussis Tohama I]
48-590 -91.800 26  VFG013248(gi:16272034) (msbA) lipid transporter ATP-binding/permease [LOS (CVF494)] [Haemophilus influenzae Rd KW20]
19 gi|13507758|ref|NP_109707.1| transport ATP-binding protein MPN019 [Mycoplasma pneumoniae M129] 634 VFDB 1-632 -98.000 23  VFG012509(gi:26247127) (iroC) ATP binding cassette transporter [Salmochelin (IA013)] [Escherichia coli CFT073]
31-633 -105.000 29  VFG013248(gi:16272034) (msbA) lipid transporter ATP-binding/permease [LOS (CVF494)] [Haemophilus influenzae Rd KW20]
20 gi|13507759|ref|NP_109708.1| helicases MPN020 [Mycoplasma pneumoniae M129] 1030 VFDB 379-1023 -9.630 10  VFG002548(gi:53720398) (wcbR) capsular polysaccharide biosynthesis fatty acid synthase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Friedberg I, Jaroszewski L, Ye Y, Godzik A. The interplay of fold recognition and experimental structure determination in structural genomics. Curr Opin Struct Biol. 2004 Jun;14(3):307-12.