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Shows best template from each database, and all templates with significant scores covering different query fragments

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# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|108885075|ref|NP_072661.2| DNA polymerase III, beta subunit (MG_001) [Mycoplasma genitalium G37] 380 PfamA30U 1-120 -44.100 20  PF00712.17; DPO3B_CAUCR/1-121; DNA polymerase III beta subunit, N-terminal domain
135-256 -39.100 11  PF02767.14; DPO3B_PSEPK/129-244; DNA polymerase III beta subunit, central domain
258-380 -54.600 29  PF02768.13; DPO3B_BACSU/253-376; DNA polymerase III beta subunit, C-terminal domain
2 gi|108885076|ref|NP_072662.2| DnaJ domain-containing protein (MG_002) [Mycoplasma genitalium G37] 310 PfamA30U 2-61 -40.300 46  PF00226.29; Q22028_CAEEL/17-79; DnaJ domain
121-309 -60.900 12  PF01556.16; T0NBZ6_9EURY/129-343; DnaJ C terminal domain
3 gi|12044853|ref|NP_072663.1| DNA gyrase subunit B (MG_003) [Mycoplasma genitalium G37] 650 PfamA30U 228-407 -82.400 39  PF00204.23; A9KS52_CLOPH/226-396; DNA gyrase B
548-645 -20.100 20  PF16898.3; K5XBZ3_PHACS/641-767; C-terminal associated domain of TOPRIM
577-639 -46.600 63  PF00986.19; M9X0E0_MANHA/738-800; DNA gyrase B subunit, carboxyl terminus
4 gi|12044854|ref|NP_072664.1| DNA gyrase subunit A (MG_004) [Mycoplasma genitalium G37] 836 PfamA30U 44-482 -63.600 20  PF00521.18; A0A0D1DXS4_USTMA/785-1232; DNA gyrase/topoisomerase IV, subunit A
620-665 -13.900 37  PF03989.11; GYRA_HAEIN/641-686; DNA gyrase C-terminal domain, beta-propeller
5 gi|12044855|ref|NP_072665.1| seryl-tRNA synthetase (MG_005) [Mycoplasma genitalium G37] 417 PfamA30U 1-103 -25.500 23  PF02403.20; C5WTV8_SORBI/1-114; Seryl-tRNA synthetase N-terminal domain
6 gi|12044856|ref|NP_072666.1| thymidylate kinase (MG_006) [Mycoplasma genitalium G37] 210 PfamA30U 9-197 -88.700 33  PF02223.15; KTHY_BACSU/8-199; Thymidylate kinase
7 gi|12044857|ref|NP_072667.1| DNA polymerase III subunit delta' (MG_007) [Mycoplasma genitalium G37] 254 PfamA30U 1-186 -32.400 11  PF06068.11; RUVB2_CAEEL/17-408; TIP49 C-terminus
2-143 -75.200 23  PF13177.4; A5VIC8_LACRD/13-171; DNA polymerase III, delta subunit
5-251 -12.100 10  PF03215.13; RAD24_YEAST/58-575; Rad17 cell cycle checkpoint protein
8 gi|12044858|ref|NP_072668.1| tRNA modification GTPase TrmE (MG_008) [Mycoplasma genitalium G37] 442 PfamA30U 6-121 -59.300 40  PF10396.7; A4CKF7_ROBBH/5-124; GTP-binding protein TrmE N-terminus
124-439 -92.400 26  PF12631.5; D5XDU4_THEPJ/127-455; MnmE helical domain
9 gi|12044859|ref|NP_072669.1| TatD family deoxyribonuclease (MG_009) [Mycoplasma genitalium G37] 262 PfamA30U 4-260 -93.900 29  PF01026.19; Y454_HAEIN/4-256; TatD related DNase
10 gi|12044860|ref|NP_072670.1| DNA primase-related protein (MG_010) [Mycoplasma genitalium G37] 218 PfamA30U 1-106 -39.200 11  PF08275.9; Q8F416_LEPIN/119-248; DNA primase catalytic core, N-terminal domain
114-201 -41.900 22  PF13155.4; Q8EPY5_OCEIH/263-348; Toprim-like
11 gi|12044861|ref|NP_072671.1| hypothetical protein (MG_011) [Mycoplasma genitalium G37] 287 PfamA30U 5-275 -32.800 12  PF05770.9; ITPK1_ORYSJ/37-341; Inositol 1, 3, 4-trisphosphate 5/6-kinase
94-273 -65.200 19  PF08443.9; RIMK_HAEIN/105-293; RimK-like ATP-grasp domain
12 gi|12044862|ref|NP_072672.1| alpha-L-glutamate ligase (MG_012) [Mycoplasma genitalium G37] 287 PfamA30U 6-287 -28.700 10  PF05770.9; ITPK1_ORYSJ/37-341; Inositol 1, 3, 4-trisphosphate 5/6-kinase
90-287 -65.800 23  PF08443.9; RIMK_HAEIN/105-293; RimK-like ATP-grasp domain
13 gi|108885077|ref|NP_072673.2| methylenetetrahydrofolate dehydrogenase/methylenetetrahydrofolate cyclohydrolase (MG_013) [Mycoplasma genitalium G37] 273 PfamA30U 2-111 -55.800 31  PF00763.21; FOLD_BACSK/6-121; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
114-264 -77.200 23  PF02882.17; FOLD1_ARATH/184-349; Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
14 gi|12044864|ref|NP_072674.1|(removed signalp:1-25) ABC transporter, ATP-binding/permease protein (MG_014) [Mycoplasma genitalium G37] 598 PfamA30U 1-265 -13.500 11  PF13748.4; G8PNQ8_PSEUV/20-254; ABC transporter transmembrane region
358-517 -27.700 22  PF00005.25; YTFR_ECOLI/25-174; ABC transporter
15 gi|12044865|ref|NP_072675.1|(removed signalp:1-25) ABC transporter, ATP-binding/permease protein (MG_015) [Mycoplasma genitalium G37] 564 PfamA30U 3-251 -27.000 PF13748.4; G8PNQ8_PSEUV/20-254; ABC transporter transmembrane region
343-492 -27.100 28  PF00005.25; YTFR_ECOLI/25-174; ABC transporter
353-536 -11.500 17  PF00625.19; KGUA_ECOLI/4-186; Guanylate kinase
16 gi|108885078|ref|NP_072678.2| SNF2 family helicase putative (MG_018) [Mycoplasma genitalium G37] (Range: 1-500) 500 PfamA30U 46-85 -12.000 42  PF04434.15; Y020_MYCPN/46-86; SWIM zinc finger
217-500 -41.700 13  PF08455.8; R4KHE0_9FIRM/244-621; Bacterial SNF2 helicase associated
17 gi|108885078|ref|NP_072678.2| SNF2 family helicase putative (MG_018) [Mycoplasma genitalium G37] (Range: 251-750) 500 PfamA30U 3-321 -36.500 13  PF08455.8; R4KHE0_9FIRM/244-621; Bacterial SNF2 helicase associated
331-500 -38.500 30  PF00176.21; RAD54_SCHPO/267-575; SNF2 family N-terminal domain
18 gi|108885078|ref|NP_072678.2| SNF2 family helicase putative (MG_018) [Mycoplasma genitalium G37] (Range: 501-1000) 500 PfamA30U 81-354 -56.300 29  PF00176.21; RAD54_SCHPO/267-575; SNF2 family N-terminal domain
297-500 -23.100 10  PF11496.6; Q6FSK5_CANGA/26-299; Class II histone deacetylase complex subunits 2 and 3
19 gi|108885078|ref|NP_072678.2| SNF2 family helicase putative (MG_018) [Mycoplasma genitalium G37] (Range: 751-1031) 281 PfamA30U 1-104 -16.400 29  PF00176.21; RAD54_SCHPO/267-575; SNF2 family N-terminal domain
47-281 -28.900 10  PF11496.6; Q6FSK5_CANGA/26-299; Class II histone deacetylase complex subunits 2 and 3
20 gi|12044869|ref|NP_072679.1| chaperone protein DnaJ (MG_019) [Mycoplasma genitalium G37] 389 PfamA30U 7-74 -38.800 52  PF00226.29; Q22028_CAEEL/17-79; DnaJ domain
137-355 -85.200 28  PF01556.16; T0NBZ6_9EURY/129-343; DnaJ C terminal domain


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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40.