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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 182next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 HGC00024 gi|162813637|dbj|BABA01031072.1|2.0 TMP01508; 217 VFDB 1-50 -5.830 20  VFG002236(gi:49476015) (virB7) 15-kDa antigen protein VirB7 [VirB/VirD4 type IV secretion system (VF0369)] [Bartonella henselae str. Houston-1]
2 HGC00044 gi|162658718|dbj|BAAX01000887.1|1.0 TMP00920; 360 VFDB 41-171 -5.710 14  VFG045350(gi:16080160) (bslA/yuaB) hydrophobin BslA [BslA (VF0411)] [Bacillus subtilis subsp. subtilis str. 168]
3 HGC00106 gi|162841414|dbj|BABA01003295.1|1.0 TMP01000; 81 VFDB 1-79 -4.110 13  VFG013292(gi:16272303) (lic3A) alpha-2,3-sialyltransferase [LOS (CVF494)] [Haemophilus influenzae Rd KW20]
4 HGC00150 gi|162733542|dbj|BAAZ01030454.1|1.0 TMP01074; 227 VFDB 15-150 -5.820 11  VFG000307(gi:15644871) (napA) neutrophil activating protein NapA [HP-NAP (VF0052)] [Helicobacter pylori 26695]
5 HGC00164 gi|163636082|dbj|BABG01000191.1|4.0 TMP00833; 173 VFDB 21-171 -5.130 15  VFG001415(gi:15610623) (lipF) Probable esterase/lipase LipF [LipF (VF0307)] [Mycobacterium tuberculosis H37Rv]
6 HGC00166 gi|163579340|dbj|BABE01005762.1|1.0 TMP00473; 223 VFDB 134-223 -4.240 10  VFG002392(gi:15610750) (espD) ESX-1 type VII secretion system EspD [ESX-1 (VF0315)] [Mycobacterium tuberculosis H37Rv]
7 HGC00248 gi|162576253|dbj|BAAV01029229.1|2.0 TMP00024; 121 VFDB 4-121 -6.480 VFG045591(gi:52842843) (lpg2637) Dot/Icm type IV secretion system effector [Dot/Icm (VF0156)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
8 HGC00267 gi|163310129|dbj|BABD01000566.1|6.0 TMP00066; 164 VFDB 1-65 -4.890 13  VFG007194(gi:28901222) (vscJ2) type III secretion system protein VscJ2 [T3SS2 (VF0409)] [Vibrio parahaemolyticus RIMD 2210633]
9 HGC00311 gi|163635536|dbj|BABG01000737.1|2.0 TMP00178; 122 VFDB 6-59 -6.610 14  VFG002458(gi:53722561) (bsaT) Type III secretion system protein BsaT [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
10 HGC00374 gi|162831834|dbj|BABA01012875.1|1.0 TMP00304; 200 VFDB 12-200 -5.810 12  VFG002190(gi:29376987) (cpsA) undecaprenyl diphosphate synthase [Capsule (VF0361)] [Enterococcus faecalis V583]
11 HGC00422 gi|163631722|dbj|BABG01004545.1|2.0 TMP00397; 274 VFDB 127-233 -5.870 14  VFG002368(gi:123443286) (wbcG) putative glycosyltransferase [O-antigen (VF0392)] [Yersinia enterocolitica subsp. enterocolitica 8081]
12 HGC00429 gi|162734516|dbj|BAAZ01029480.1|1.0 TMP00411; 255 VFDB 8-48 -5.820 15  VFG000158(gi:33591933) (cyaC) cyclolysin-activating lysine-acyltransferase [Cya (VF0028)] [Bordetella pertussis Tohama I]
13 HGC00485 gi|163636056|dbj|BABG01000217.1|3.0 TMP00523; 127 VFDB 21-110 -7.400 11  VFG000758(gi:6009388) (bfpH) BfpH lipoprotein [BFP (VF0174)] [Escherichia coli B171]
14 HGC00509 gi|162658693|dbj|BAAX01000912.1|3.0 TMP00561; 136 VFDB 26-136 -5.280 16  VFG002419(gi:21281935) (coa) staphylocoagulase precursor [Staphylocoagulase (VF0421)] [Staphylococcus aureus subsp. aureus MW2]
15 HGC00518 gi|162728471|dbj|BAAY01000490.1|2.0 TMP00574; 92 VFDB 36-87 -4.690 10  VFG001907(gi:15791889) (flgB) flagellar basal body rod protein FlgB [Flagella (VF0114)] [Campylobacter jejuni subsp. jejuni NCTC 11168]
16 HGC00522 gi|163636101|dbj|BABG01000172.1|3.0 TMP00580; 203 VFDB 5-125 -6.100 VFG000329(gi:16273440) (licD) phosphocholine transferase [LOS (VF0044)] [Haemophilus influenzae Rd KW20]
17 HGC00552 gi|162599220|dbj|BAAV01006262.1|2.0 TMP00636; 115 VFDB 1-114 -8.680 13  VFG002231(gi:49476010) (virB2) type IV secretion system major pilin subunit VirB2 protein homolog [VirB/VirD4 type IV secretion system (VF0369)] [Bartonella henselae str. Houston-1]
18 HGC00573 gi|163306732|dbj|BABD01003960.1|2.0 TMP00669; 125 VFDB 58-91 -5.980 17  VFG042447(gi:145699) (daaF) DaaF protein [F1845 fimbrial adhesin (AI016)] [Escherichia coli str. C1845]
19 HGC00579 gi|163284429|dbj|BABD01026259.1|2.0 TMP00679; 172 VFDB 1-145 -10.300 VFG000417(gi:16082686) (pla) plasminogen activator protease precursor [Pla (VF0139)] [Yersinia pestis CO92]
20 HGC00593 gi|162858151|dbj|BABB01011554.1|1.0 TMP00709; 112 VFDB 18-100 -5.990 13  VFG045542(gi:52842003) (lpg1776) Dot/Icm type IV secretion system effector [Dot/Icm (VF0156)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40.