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Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:

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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 182next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 HGC00024 gi|162813637|dbj|BABA01031072.1|2.0 TMP01508; 217 NEW_HUMAN_DOMAINS 127-211 -5.670 sp|Q6ZVS7|F183B_HUMAN Protein FAM183B OS=Homo sapiens GN=FAM183B PE=2 SV=2 (Range: 1-135)
2 HGC00044 gi|162658718|dbj|BAAX01000887.1|1.0 TMP00920; 360 NEW_HUMAN_DOMAINS 40-142 -6.370 sp|Q9P217|ZSWM5_HUMAN Zinc finger SWIM domain-containing protein 5 OS=Homo sapiens GN=ZSWIM5 PE=2 SV=2 (Range: 178-458)
3 HGC00106 gi|162841414|dbj|BABA01003295.1|1.0 TMP01000; 81 NEW_HUMAN_DOMAINS 5-64 -6.200 10  tr|D6REQ1|D6REQ1_HUMAN Uncharacterized protein OS=Homo sapiens GN=CASP12 PE=4 SV=1 (Range: 93-168)
4 HGC00150 gi|162733542|dbj|BAAZ01030454.1|1.0 TMP01074; 227 NEW_HUMAN_DOMAINS 2-55 -6.180 14  sp|Q8N614|TM156_HUMAN Transmembrane protein 156 OS=Homo sapiens GN=TMEM156 PE=2 SV=2 (Range: 23-89)
5 HGC00164 gi|163636082|dbj|BABG01000191.1|4.0 TMP00833; 173 NEW_HUMAN_DOMAINS 29-110 -6.120 13  sp|Q14865|ARI5B_HUMAN AT-rich interactive domain-containing protein 5B OS=Homo sapiens GN=ARID5B PE=1 SV=3 (Range: 1077-1188)
6 HGC00166 gi|163579340|dbj|BABE01005762.1|1.0 TMP00473; 223 NEW_HUMAN_DOMAINS 133-209 -5.720 sp|Q6ZP82|CC141_HUMAN Coiled-coil domain-containing protein 141 OS=Homo sapiens GN=CCDC141 PE=1 SV=1 (Range: 35-125)
7 HGC00248 gi|162576253|dbj|BAAV01029229.1|2.0 TMP00024; 121 NEW_HUMAN_DOMAINS 7-36 -6.130 tr|F5H0X0|F5H0X0_HUMAN Uncharacterized protein OS=Homo sapiens GN=CACNA1C PE=4 SV=1 (Range: 1-100)
8 HGC00267 gi|163310129|dbj|BABD01000566.1|6.0 TMP00066; 164 NEW_HUMAN_DOMAINS 2-116 -5.940 10  sp|Q8IY21|DDX60_HUMAN Probable ATP-dependent RNA helicase DDX60 OS=Homo sapiens GN=DDX60 PE=2 SV=3 (Range: 1584-1712)
9 HGC00311 gi|163635536|dbj|BABG01000737.1|2.0 TMP00178; 122 NEW_HUMAN_DOMAINS 3-36 -6.800 29  sp|Q9UQ03|COR2B_HUMAN Coronin-2B OS=Homo sapiens GN=CORO2B PE=2 SV=4 (Range: 404-480)
10 HGC00374 gi|162831834|dbj|BABA01012875.1|1.0 TMP00304; 200 NEW_HUMAN_DOMAINS 36-136 -6.090 11  sp|O75643|U520_HUMAN U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Homo sapiens GN=SNRNP200 PE=1 SV=2 (Range: 92-205)
11 HGC00422 gi|163631722|dbj|BABG01004545.1|2.0 TMP00397; 274 NEW_HUMAN_DOMAINS 127-225 -6.530 11  sp|P42356|PI4KA_HUMAN Phosphatidylinositol 4-kinase alpha OS=Homo sapiens GN=PI4KA PE=1 SV=3 (Range: 370-463)
12 HGC00429 gi|162734516|dbj|BAAZ01029480.1|1.0 TMP00411; 255 NEW_HUMAN_DOMAINS 4-150 -6.850 13  sp|Q659C4|LAR1B_HUMAN La-related protein 1B OS=Homo sapiens GN=LARP1B PE=1 SV=2 (Range: 698-848)
13 HGC00485 gi|163636056|dbj|BABG01000217.1|3.0 TMP00523; 127 NEW_HUMAN_DOMAINS 24-118 -5.310 13  sp|O94985|CSTN1_HUMAN Calsyntenin-1 OS=Homo sapiens GN=CLSTN1 PE=1 SV=1 (Range: 562-687)
14 HGC00509 gi|162658693|dbj|BAAX01000912.1|3.0 TMP00561; 136 NEW_HUMAN_DOMAINS 27-114 -5.290 12  sp|Q8NDM7|WDR96_HUMAN WD repeat-containing protein 96 OS=Homo sapiens GN=WDR96 PE=2 SV=3 (Range: 1421-1555)
15 HGC00518 gi|162728471|dbj|BAAY01000490.1|2.0 TMP00574; 92 NEW_HUMAN_DOMAINS 57-92 -7.070 16  sp|Q6ZU11|YD002_HUMAN Uncharacterized protein FLJ44066 OS=Homo sapiens PE=1 SV=1 (Range: 67-168)
16 HGC00522 gi|163636101|dbj|BABG01000172.1|3.0 TMP00580; 203 NEW_HUMAN_DOMAINS 13-203 -5.870 11  sp|Q7Z2Z1|TICRR_HUMAN Treslin OS=Homo sapiens GN=TICRR PE=1 SV=2 (Range: 277-506)
17 HGC00552 gi|162599220|dbj|BAAV01006262.1|2.0 TMP00636; 115 NEW_HUMAN_DOMAINS 34-72 -6.060 15  sp|Q9BZC7|ABCA2_HUMAN ATP-binding cassette sub-family A member 2 OS=Homo sapiens GN=ABCA2 PE=1 SV=3 (Range: 1428-1583)
18 HGC00573 gi|163306732|dbj|BABD01003960.1|2.0 TMP00669; 125 NEW_HUMAN_DOMAINS 24-103 -5.260 sp|Q9P2D8|UNC79_HUMAN Protein unc-79 homolog OS=Homo sapiens GN=UNC79 PE=2 SV=3 (Range: 1264-1440)
19 HGC00579 gi|163284429|dbj|BABD01026259.1|2.0 TMP00679; 172 NEW_HUMAN_DOMAINS 48-171 -6.170 11  sp|Q96MK2|FA65C_HUMAN Protein FAM65C OS=Homo sapiens GN=FAM65C PE=2 SV=4 (Range: 191-319)
20 HGC00593 gi|162858151|dbj|BABB01011554.1|1.0 TMP00709; 112 NEW_HUMAN_DOMAINS 1-64 -7.400 18  tr|E7ETZ9|E7ETZ9_HUMAN Uncharacterized protein OS=Homo sapiens GN=ANKLE1 PE=4 SV=2 (Range: 315-476)


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40.