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Shows best template from each database, and all templates with significant scores covering different query fragments

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# Query Length Result vs. Range Score %id Covered by template(s)
1 sp|Q29940|1B59_HUMAN(removed signalp:1-24) HLA class I histocompatibility antigen, B-59 alpha chain OS=Homo sapiens GN=HLA-B PE=2 SV=1 338 PfamA30U 1-179 -102.000 73  PF00129.16; HA10_MOUSE/25-203; Class I Histocompatibility antigen, domains alpha 1 and 2
185-266 -24.700 26  PF07654.13; GCAB_MOUSE/234-320; Immunoglobulin C1-set domain
2 sp|P08908|5HT1A_HUMAN 5-hydroxytryptamine receptor 1A OS=Homo sapiens GN=HTR1A PE=1 SV=3 422 PfamA30U 36-421 -44.900 11  PF04789.13; E3LU62_CAERE/638-942; Protein of unknown function (DUF621 topsan)
53-400 -95.500 38  PF00001.19; HRH2_CANLF/35-288; 7 transmembrane receptor (rhodopsin family)
3 sp|Q15758|AAAT_HUMAN Neutral amino acid transporter B(0) OS=Homo sapiens GN=SLC1A5 PE=1 SV=2 541 PfamA30U 54-485 -88.400 36  PF00375.16; Q8EU68_OCEIH/3-398; Sodium:dicarboxylate symporter family
4 sp|P61221|ABCE1_HUMAN ATP-binding cassette sub-family E member 1 OS=Homo sapiens GN=ABCE1 PE=1 SV=1 599 PfamA30U 93-245 -29.200 18  PF00005.25; YTFR_ECOLI/25-174; ABC transporter
103-528 -13.000 11  PF13166.4; Q63PW4_BURPS/9-780; AAA domain
370-518 -15.600 13  PF13401.4; B2UJB3_RALPJ/42-210; AAA domain
5 sp|P07108|ACBP_HUMAN Acyl-CoA-binding protein OS=Homo sapiens GN=DBI PE=1 SV=2 87 PfamA30U 3-82 -60.600 35  PF00887.17; B7PHH9_IXOSC/19-99; Acyl CoA binding protein
6 sp|O15254|ACOX3_HUMAN Peroxisomal acyl-coenzyme A oxidase 3 OS=Homo sapiens GN=ACOX3 PE=1 SV=2 (Range: 1-300) 300 PfamA30U 31-153 -27.300 10  PF14749.4; F1R3V9_DANRE/15-133; Acyl-coenzyme A oxidase N-terminal
155-266 -17.900 26  PF02770.17; Q7MW70_PORGI/172-269; Acyl-CoA dehydrogenase, middle domain
7 sp|O15254|ACOX3_HUMAN Peroxisomal acyl-coenzyme A oxidase 3 OS=Homo sapiens GN=ACOX3 PE=1 SV=2 (Range: 151-450) 300 PfamA30U 5-116 -19.000 26  PF02770.17; Q7MW70_PORGI/172-269; Acyl-CoA dehydrogenase, middle domain
144-300 -17.000 17  PF00441.22; I6XFA9_MYCTU/253-403; Acyl-CoA dehydrogenase, C-terminal domain
8 sp|O15254|ACOX3_HUMAN Peroxisomal acyl-coenzyme A oxidase 3 OS=Homo sapiens GN=ACOX3 PE=1 SV=2 (Range: 301-600) 300 PfamA30U 1-166 -25.100 19  PF00441.22; I6XFA9_MYCTU/253-403; Acyl-CoA dehydrogenase, C-terminal domain
210-300 -26.500 42  PF01756.17; K1PYL9_CRAGI/349-534; Acyl-CoA oxidase
9 sp|O15254|ACOX3_HUMAN Peroxisomal acyl-coenzyme A oxidase 3 OS=Homo sapiens GN=ACOX3 PE=1 SV=2 (Range: 451-700) 250 PfamA30U 60-242 -81.000 48  PF01756.17; K1PYL9_CRAGI/349-534; Acyl-CoA oxidase
10 sp|Q9H013|ADA19_HUMAN(removed signalp:1-25) Disintegrin and metalloproteinase domain-containing protein 19 OS=Homo sapiens GN=ADAM19 PE=1 SV=3 (Range: 1-300) 300 PfamA30U 19-137 -38.100 20  PF01562.17; F4WTG8_ACREC/43-191; Reprolysin family propeptide
185-300 -53.000 24  PF01421.17; ADAM2_BOVIN/178-375; Reprolysin (M12B) family zinc metalloprotease
11 sp|Q9H013|ADA19_HUMAN(removed signalp:1-25) Disintegrin and metalloproteinase domain-containing protein 19 OS=Homo sapiens GN=ADAM19 PE=1 SV=3 (Range: 151-450) 300 PfamA30U 35-233 -76.200 25  PF01421.17; ADAM2_BOVIN/178-375; Reprolysin (M12B) family zinc metalloprotease
250-300 -26.000 49  PF00200.21; G3I9D8_CRIGR/417-489; Disintegrin
12 sp|Q9H013|ADA19_HUMAN(removed signalp:1-25) Disintegrin and metalloproteinase domain-containing protein 19 OS=Homo sapiens GN=ADAM19 PE=1 SV=3 (Range: 301-600) 300 PfamA30U 1-83 -25.000 26  PF01421.17; ADAM2_BOVIN/178-375; Reprolysin (M12B) family zinc metalloprotease
100-172 -38.400 49  PF00200.21; G3I9D8_CRIGR/417-489; Disintegrin
177-299 -40.600 31  PF08516.10; F7FQP8_MONDO/502-619; ADAM cysteine-rich
13 sp|Q9H013|ADA19_HUMAN(removed signalp:1-25) Disintegrin and metalloproteinase domain-containing protein 19 OS=Homo sapiens GN=ADAM19 PE=1 SV=3 (Range: 451-750) 300 PfamA30U 5-250 -10.600 13  PF07243.9; GP_PTPV/282-808; Phlebovirus glycoprotein G1
27-149 -42.700 31  PF08516.10; F7FQP8_MONDO/502-619; ADAM cysteine-rich
14 sp|Q9H013|ADA19_HUMAN(removed signalp:1-25) Disintegrin and metalloproteinase domain-containing protein 19 OS=Homo sapiens GN=ADAM19 PE=1 SV=3 (Range: 601-900) 300 PfamA30U 5-68 -10.000 20  PF04885.11; M4CFF0_BRARP/12-161; Stigma-specific protein, Stig1
21-285 -10.000 PF05934.9; CLCC1_RAT/3-541; Mid-1-related chloride channel (MCLC)
15 sp|Q9H013|ADA19_HUMAN(removed signalp:1-25) Disintegrin and metalloproteinase domain-containing protein 19 OS=Homo sapiens GN=ADAM19 PE=1 SV=3 (Range: 751-930) 180 PfamA30U 9-180 -22.000 PF05934.9; CLCC1_RAT/3-541; Mid-1-related chloride channel (MCLC)
16 sp|P11766|ADHX_HUMAN Alcohol dehydrogenase class-3 OS=Homo sapiens GN=ADH5 PE=1 SV=4 374 PfamA30U 32-159 -28.200 38  PF08240.10; A9CHB7_AGRFC/24-130; Alcohol dehydrogenase GroES-like domain
183-374 -18.000 17  PF16912.3; I7BJ28_NATSJ/144-370; Glucose dehydrogenase C-terminus
202-333 -21.700 21  PF00107.24; ADH_SULSO/182-311; Zinc-binding dehydrogenase
17 sp|Q99490|AGAP2_HUMAN Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 OS=Homo sapiens GN=AGAP2 PE=1 SV=2 (Range: 1-300) 300 PfamA30U 20-205 -17.400 PF05934.9; CLCC1_RAT/3-541; Mid-1-related chloride channel (MCLC)
49-298 -17.000 PF11725.6; Q887C9_PSESM/17-1794; Pathogenicity factor
18 sp|Q99490|AGAP2_HUMAN Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 OS=Homo sapiens GN=AGAP2 PE=1 SV=2 (Range: 151-450) 300 PfamA30U 4-291 -14.100 PF11725.6; Q887C9_PSESM/17-1794; Pathogenicity factor
19 sp|Q99490|AGAP2_HUMAN Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 OS=Homo sapiens GN=AGAP2 PE=1 SV=2 (Range: 301-600) 300 PfamA30U 108-268 -53.700 29  PF00071.20; RAB9A_CANLF/9-174; Ras family
20 sp|Q99490|AGAP2_HUMAN Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 OS=Homo sapiens GN=AGAP2 PE=1 SV=2 (Range: 451-750) 300 PfamA30U 1-118 -38.900 25  PF00071.20; RAB9A_CANLF/9-174; Ras family


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40.