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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 1653next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|15644635|ref|NP_206803.1| transcription antitermination protein NusB (HP0001) [Helicobacter pylori 26695] 138 PfamA30U 5-130 -73.400 24  PF01029.16; NUSB_DEHM1/6-132; NusB family
2 gi|15644636|ref|NP_206804.1| 6,7-dimethyl-8-ribityllumazine synthase (HP0002) [Helicobacter pylori 26695] 156 PfamA30U 13-152 -94.600 50  PF00885.17; R7PPI3_9FIRM/12-151; 6,7-dimethyl-8-ribityllumazine synthase
3 gi|15644637|ref|NP_206805.1| 2-dehydro-3-deoxyphosphooctonate aldolase (HP0003) [Helicobacter pylori 26695] 276 PfamA30U 2-243 -11.500 18  PF00793.18; AROG_HAEIN/32-347; DAHP synthetase I family
4 gi|15644638|ref|NP_206806.1| carbonic anhydrase (icfA) (HP0004) [Helicobacter pylori 26695] 221 PfamA30U 33-195 -86.000 26  PF00484.17; Q28W87_JANSC/42-203; Carbonic anhydrase
5 gi|15644639|ref|NP_206807.1| orotidine 5'-phosphate decarboxylase (HP0005) [Helicobacter pylori 26695] 227 PfamA30U 2-223 -110.000 34  PF00215.22; PYRF_STRP1/5-224; Orotidine 5`-phosphate decarboxylase / HUMPS family
6 gi|15644640|ref|NP_206808.1| pantoate--beta-alanine ligase (HP0006) [Helicobacter pylori 26695] 276 PfamA30U 3-275 -126.000 38  PF02569.13; L0F3M1_DESDL/2-278; Pantoate-beta-alanine ligase
7 gi|15646197|ref|NP_206811.1| outer membrane protein (HP0009) [Helicobacter pylori 26695] 634 PfamA30U 412-634 -9.560 13  PF05736.9; PORF_PSEFL/1-186; OprF membrane domain
465-634 -59.600 38  PF01856.15; O26005_HELPY/59-248; Helicobacter outer membrane protein
8 gi|15644643|ref|NP_206812.1| chaperonin GroEL (HP0010) [Helicobacter pylori 26695] 546 PfamA30U 22-522 -29.800 17  PF00118.22; TCPB_DICDI/34-524; TCP-1/cpn60 chaperonin family
9 gi|15644644|ref|NP_206813.1| co-chaperonin GroES (HP0011) [Helicobacter pylori 26695] 118 PfamA30U 3-87 -45.800 35  PF00166.19; B7PEU9_IXOSC/8-98; Chaperonin 10 Kd subunit
10 gi|15644645|ref|NP_206814.1| DNA primase (HP0012) [Helicobacter pylori 26695] 559 PfamA30U 3-98 -56.500 45  PF01807.18; DNAG_PSEPK/6-101; CHC2 zinc finger
117-239 -51.100 35  PF08275.9; Q8F416_LEPIN/119-248; DNA primase catalytic core, N-terminal domain
249-334 -41.100 45  PF13155.4; Q8EPY5_OCEIH/263-348; Toprim-like
446-558 -9.570 15  PF08278.9; D3V2J4_XENBS/452-574; DNA primase DnaG DnaB-binding
11 gi|15644646|ref|NP_206815.1| hypothetical protein (HP0013) [Helicobacter pylori 26695] 350 PfamA30U 4-347 -58.800 13  PF03054.14; MNMA_CHLTR/3-350; tRNA methyl transferase
12 gi|15644647|ref|NP_206816.1| hypothetical protein (HP0014) [Helicobacter pylori 26695] 275 PfamA30U 7-239 -10.300 12  PF01557.16; Q1LF48_CUPMC/58-257; Fumarylacetoacetate (FAA) hydrolase family
13 gi|15644648|ref|NP_206817.1| hypothetical protein (HP0015) [Helicobacter pylori 26695] 93 PfamA30U 21-89 -13.400 18  PF04956.11; Q1M9P0_RHIL3/1-100; TrbC/VIRB2 family
14 gi|15644649|ref|NP_206818.1| hypothetical protein (HP0016) [Helicobacter pylori 26695] 87 PfamA30U 20-87 -7.150 16  PF05297.9; LMP1_EBVB9/1-386; Herpesvirus latent membrane protein 1 (LMP1)
15 gi|15644650|ref|NP_206819.1| virB4 homolog (virB4) (HP0017) [Helicobacter pylori 26695] 787 PfamA30U 175-375 -50.900 14  PF03135.12; Q9ZE45_RICPR/194-399; CagE, TrbE, VirB family, component of type IV transporter system
416-744 -28.300 12  PF12846.5; Q833R2_ENTFA/443-804; AAA-like domain
436-779 -12.200 14  PF05872.10; Q2YMR9_BRUA2/13-501; Bacterial protein of unknown function (DUF853 topsan)
16 gi|15644651|ref|NP_206820.1| hypothetical protein (HP0018) [Helicobacter pylori 26695] 469 PfamA30U 20-160 -19.900 11  PF12968.5; Q8KAL8_CHLTE/2-144; Domain of Unknown Function (DUF3856 topsan)
23-265 -19.100 PF04733.12; COPE2_ARATH/7-293; Coatomer epsilon subunit
26-469 -15.400 PF12569.6; A9SDC6_PHYPA/187-705; NMDA receptor-regulated protein 1
17 gi|15644652|ref|NP_206821.1| chemotaxis protein (cheV) (HP0019) [Helicobacter pylori 26695] 321 PfamA30U 27-173 -11.300 11  PF01584.17; Q8XQ78_RALSO/559-691; CheW-like domain
199-305 -27.600 24  PF00072.22; RSSB_ECOLI/10-121; Response regulator receiver domain
18 gi|15644653|ref|NP_206822.1| carboxynorspermidine decarboxylase (nspC) (HP0020) [Helicobacter pylori 26695] 405 PfamA30U 268-384 -12.400 19  PF00278.20; R9SMY8_9EURY/294-398; Pyridoxal-dependent decarboxylase, C-terminal sheet domain
19 gi|15644654|ref|NP_206823.1| lipid A 1-phosphatase (HP0021) [Helicobacter pylori 26695] 190 PfamA30U 79-189 -32.100 18  PF01569.19; F2G969_ALTMD/101-223; PAP2 superfamily
20 gi|15644655|ref|NP_206824.1| lipid A phosphoethanolamine transferase (HP0022) [Helicobacter pylori 26695] 521 PfamA30U 57-203 -39.300 15  PF08019.10; E0SIY3_DICD3/59-211; Domain of unknown function (DUF1705 topsan)
191-499 -11.600 PF02995.15; Q9VIP6_DROME/56-555; Protein of unknown function (DUF229 topsan)


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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40.