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Shows best template from each database, and all templates with significant scores covering different query fragments

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# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|238922433|ref|YP_002935946.1| chromosomal replication initiation protein (EUBREC_0001) [Eubacterium rectale ATCC 33656] 453 JCSG0516 1-451 -120.000 27  C.LS21333A NP_418828.1 430427 Purified-2014-07-08
2 gi|238922434|ref|YP_002935947.1| DNA polymerase III, beta subunit (EUBREC_0002) [Eubacterium rectale ATCC 33656] 370 JCSG0516 1-370 -114.000 100  MH15438A YP_002935947.1 394339 PDB-2011-07-20
3 gi|238922435|ref|YP_002935948.1| hypothetical protein (EUBREC_0003) [Eubacterium rectale ATCC 33656] 71 JCSG0516 13-63 -13.800 20  SP0223F ZP_04009405.1 413831 Purified-2010-09-29
4 gi|238922436|ref|YP_002935949.1| DNA replication and repair protein RecF (EUBREC_0004) [Eubacterium rectale ATCC 33656] 362 JCSG0516 1-349 -21.400 15  NT12358C DHAF_12NOV03_CONTIG1086_REVISED_GENE3509 378730 Purified-2008-01-24
5 gi|238922437|ref|YP_002935950.1| DNA gyrase, B subunit (EUBREC_0005) [Eubacterium rectale ATCC 33656] 645 JCSG0516 10-645 -193.000 53  TM0833 TM0833 282703 Purified-2005-04-05
6 gi|238922438|ref|YP_002935951.1| DNA gyrase, A subunit (EUBREC_0006) [Eubacterium rectale ATCC 33656] 852 JCSG0516 7-811 -198.000 42  TM1084 TM1084 282951 Purified-2001-04-24
7 gi|238922439|ref|YP_002935952.1| hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit (EUBREC_0007) [Eubacterium rectale ATCC 33656] 281 JCSG0516 2-281 -123.000 58  PL0541G NP_907888.1 402024 Purified-2009-07-24
8 gi|238922440|ref|YP_002935953.1| hypothetical protein (EUBREC_0008) [Eubacterium rectale ATCC 33656] 47 JCSG0516 11-47 -5.820 18  RH9923E ZP_02037848.1 416195 Selected-2009-12-04
9 gi|238922441|ref|YP_002935954.1| fumarate hydratase subunit B (EUBREC_0009) [Eubacterium rectale ATCC 33656] 183 JCSG0516 1-182 -102.000 61  TB0541F 15026155 357125 Purified-2004-05-28
10 gi|238922442|ref|YP_002935955.1| putative oxidoreductase (EUBREC_0016) [Eubacterium rectale ATCC 33656] 329 JCSG0516 3-329 -105.000 25  MA10727A NP_055290.1 400079 Purified-2009-03-13
11 gi|238922443|ref|YP_002935956.1| transcription repressor of fructose operon FruR (EUBREC_0017) [Eubacterium rectale ATCC 33656] 247 JCSG0516 1-247 -108.000 33  FH7660A NP_814469.1 367165 Crystal|NMR-2006-07-08
12 gi|238922444|ref|YP_002935957.1| fructose-1-phosphate kinase (EUBREC_0018) [Eubacterium rectale ATCC 33656] 305 JCSG0516 1-304 -82.200 27  TM0828 TM0828 282698 PDB-2002-10-15
13 gi|238922445|ref|YP_002935958.1| PTS system, fructose-specific, IIABC component (EUBREC_0019) [Eubacterium rectale ATCC 33656] 642 JCSG0516 3-150 -25.800 24  XB5513A NP_645125.1 358651 Purified-2005-03-24
14 gi|238922446|ref|YP_002935959.1| chaperone protein DnaK (EUBREC_0020) [Eubacterium rectale ATCC 33656] 586 JCSG0516 1-585 -185.000 51  TM0373 TM0373 282248 Purified-2001-03-14
15 gi|238922447|ref|YP_002935960.1| hypothetical protein (EUBREC_0021) [Eubacterium rectale ATCC 33656] 290 JCSG0516 38-158 -9.940 14  TM1614 TM1614 283471 Purified-2001-11-20
16 gi|238922448|ref|YP_002935961.1| DNA-binding response regulator (EUBREC_0022) [Eubacterium rectale ATCC 33656] 230 JCSG0516 2-230 -89.800 43  TM1655 TM1655 283512 Selected-2001-10-12
17 gi|238922449|ref|YP_002935962.1|(removed signalp:1-29) hypothetical protein (EUBREC_0023) [Eubacterium rectale ATCC 33656] 428 JCSG0516 125-427 -49.400 23  TT16376A DHAF_12NOV03_CONTIG1084_REVISED_GENE3134 404635 Selected-2009-08-14
18 gi|238922450|ref|YP_002935963.1| hypothetical protein (EUBREC_0024) [Eubacterium rectale ATCC 33656] 761 JCSG0516 43-487 -83.000 24  TM0291 TM0291 282167 Purified-2005-02-03
545-761 -21.000 21  TM0292 TM0292 282168 Purified-2001-09-05
19 gi|238922451|ref|YP_002935964.1| hypothetical protein (EUBREC_0025) [Eubacterium rectale ATCC 33656] 437 JCSG0516 46-405 -49.700 19  TM1187 TM1187 283052 Purified-2001-11-06
20 gi|238922452|ref|YP_002935965.1| hypothetical protein (EUBREC_0026) [Eubacterium rectale ATCC 33656] 877 JCSG0516 1-523 -20.800 MA16111A NP_055448.1 400166 Selected-2008-12-22
23-862 -19.500 SP17586C NP_439153.1 411588 Selected-2009-11-12
599-877 -40.600 18  MJ3655B NP_436729.1 403700 Purified-2009-09-18


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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40.