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# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|16127995|ref|NP_414542.1| thr operon leader peptide (thrL b0001 exp) [Escherichia coli str. K-12 substr. MG1655] 21 SCOP206 1-21 -1.360 19  d2piha1 a.281.1.1 (A:2-124) Uncharacterized protein YmcA {Bacillus subtilis [TaxId: 1423]}
2 gi|16127996|ref|NP_414543.1| fused aspartokinase I and homoserine dehydrogenase I (thrA b0002 exp) [Escherichia coli str. K-12 substr. MG1655] 820 SCOP206 3-300 -81.700 35  d3c1ma1 c.73.1.3 (A:2-303) automated matches {Methanocaldococcus jannaschii [TaxId: 2190]}
315-381 -28.500 34  d3c1ma3 d.58.18.0 (A:404-470) automated matches {Methanocaldococcus jannaschii [TaxId: 2190]}
382-477 -36.200 24  d3c1ma2 d.58.18.0 (A:304-403) automated matches {Methanocaldococcus jannaschii [TaxId: 2190]}
462-635 -58.800 25  d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
614-798 -77.700 36  d1ebfa2 d.81.1.2 (A:151-340) Homoserine dehydrogenase {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
3 gi|16127997|ref|NP_414544.1| homoserine kinase (thrB b0003 exp) [Escherichia coli str. K-12 substr. MG1655] 310 SCOP206 2-167 -65.900 31  d1h72c1 d.14.1.5 (C:5-167) Homoserine kinase {Methanococcus jannaschii [TaxId: 2190]}
170-308 -54.400 28  d1h72c2 d.58.26.1 (C:168-300) Homoserine kinase {Methanococcus jannaschii [TaxId: 2190]}
4 gi|16127998|ref|NP_414545.1| threonine synthase (thrC b0004 exp) [Escherichia coli str. K-12 substr. MG1655] 428 SCOP206 1-428 -131.000 100  d1vb3a1 c.79.1.1 (A:1-428) Threonine synthase {Escherichia coli [TaxId: 562]}
5 gi|16127999|ref|NP_414546.1|(removed signal:1-23) predicted protein (yaaX b0005 exp) [Escherichia coli str. K-12 substr. MG1655] 75 SCOP206 1-38 -7.180 15  d4j9fa_ b.34.2.1 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}
6 gi|16128000|ref|NP_414547.1| conserved protein, UPF0246 family (yaaA b0006 exp) [Escherichia coli str. K-12 substr. MG1655] 258 SCOP206 112-220 -7.290 20  d2ofca_ b.97.1.2 (A:) automated matches {Athelia rolfsii [TaxId: 39291]}
7 gi|16128001|ref|NP_414548.1| predicted transporter (yaaJ b0007 exp) [Escherichia coli str. K-12 substr. MG1655] 476 SCOP206 59-427 -8.640 13  d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
8 gi|16128002|ref|NP_414549.1| transaldolase B (talB b0008 exp) [Escherichia coli str. K-12 substr. MG1655] 317 SCOP206 2-317 -153.000 99  d3cwna_ c.1.10.1 (A:) automated matches {Escherichia coli [TaxId: 562]}
9 gi|16128003|ref|NP_414550.1| molybdochelatase incorporating molybdenum into molybdopterin (mog b0009 exp) [Escherichia coli str. K-12 substr. MG1655] 195 SCOP206 2-191 -102.000 99  d1di6a_ c.57.1.1 (A:) MogA {Escherichia coli [TaxId: 562]}
10 gi|16128004|ref|NP_414551.1| inner membrane protein, Grp1_Fun34_YaaH family (yaaH b0010 exp) [Escherichia coli str. K-12 substr. MG1655] 188 SCOP206 2-84 -7.330 22  d1e5da1 c.23.5.1 (A:251-402) Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain {Desulfovibrio gigas [TaxId: 879]}
11 gi|16128005|ref|NP_414552.1| conserved protein, UPF0174 family (yaaW b0011 exp) [Escherichia coli str. K-12 substr. MG1655] 237 SCOP206 2-93 -6.490 13  d2mhra_ a.24.4.1 (A:) Myohemerythin {Sipunculan worm (Themiste zostericola) [TaxId: 6437]}
12 gi|16128007|ref|NP_414554.1|(removed signal:1-23) conserved protein, UPF0412 family (yaaI b0013 exp) [Escherichia coli str. K-12 substr. MG1655] 111 SCOP206 31-97 -6.040 10  d1bu8a1 b.12.1.2 (A:337-449) Pancreatic lipase, C-terminal domain {Norway rat (Rattus norvegicus) [TaxId: 10116]}
13 gi|16128008|ref|NP_414555.1| chaperone Hsp70, co-chaperone with DnaJ (dnaK b0014 exp) [Escherichia coli str. K-12 substr. MG1655] 638 SCOP206 4-180 -73.300 33  d4gnia1 c.55.1.0 (A:13-196) automated matches {Chaetomium thermophilum [TaxId: 759272]}
183-382 -63.900 45  d3i33a2 c.55.1.1 (A:190-384) automated matches {Human (Homo sapiens) [TaxId: 9606]}
389-506 -75.100 100  d4f01a1 b.130.1.1 (A:389-506) automated matches {Escherichia coli K-12 [TaxId: 83333]}
507-602 -40.200 100  d4f01a2 a.8.4.1 (A:507-602) automated matches {Escherichia coli K-12 [TaxId: 83333]}
14 gi|16128009|ref|NP_414556.1| chaperone Hsp40, co-chaperone with DnaK (dnaJ b0015 exp) [Escherichia coli str. K-12 substr. MG1655] 376 SCOP206 1-80 -45.800 37  d2yuaa1 a.2.3.0 (A:8-93) automated matches {Human (Homo sapiens) [TaxId: 9606]}
2-111 -34.000 18  d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]}
131-209 -44.300 100  d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]}
187-254 -13.700 27  d2q2ga1 b.4.1.0 (A:4-86) automated matches {Cryptosporidium parvum [TaxId: 353152]}
255-344 -20.400 25  d3agxa2 b.4.1.0 (A:246-340) automated matches {Human (Homo sapiens) [TaxId: 9606]}
15 gi|16128010|ref|NP_414557.1| IS186 transposase (insL b0016 exp) [Escherichia coli str. K-12 substr. MG1655] 370 SCOP206 34-359 -26.300 12  d1musa1 c.55.3.4 (A:4-476) Transposase inhibitor (Tn5 transposase) {Escherichia coli [TaxId: 562]}
16 gi|16128012|ref|NP_414559.1| regulatory protein for HokC, overlaps CDS of hokC (mokC b0018 exp) [Escherichia coli str. K-12 substr. MG1655] 69 SCOP206 30-69 -4.870 11  d1q25a1 b.64.1.1 (A:7-129) Cation-independent mannose-6-phosphate receptor (MIR-receptor) {Cow (Bos taurus) [TaxId: 9913]}
17 gi|49175991|ref|YP_025292.1| toxic membrane protein, small (hokC b4412 exp) [Escherichia coli str. K-12 substr. MG1655] 50 SCOP206 1-27 -4.410 11  d3wu2i_ f.23.37.1 (I:) Photosystem II reaction center protein I, PsbI {Thermosynechococcus vulcanus [TaxId: 32053]}
18 gi|16128013|ref|NP_414560.1| sodium-proton antiporter (nhaA b0019 exp) [Escherichia coli str. K-12 substr. MG1655] 388 SCOP206 41-241 -5.920 12  d1ikpa1 b.29.1.7 (A:2-251) Exotoxin A, N-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}
19 gi|16128014|ref|NP_414561.1| DNA-binding transcriptional activator (nhaR b0020 exp) [Escherichia coli str. K-12 substr. MG1655] 301 SCOP206 6-91 -37.700 27  d1ixca1 a.4.5.37 (A:1-89) LysR-type regulatory protein CbnR {Ralstonia eutropha [TaxId: 106590]}
90-295 -36.700 11  d2fyia1 c.94.1.1 (A:88-307) LysR-type regulatory protein Cbl {Escherichia coli [TaxId: 562]}
20 gi|16128015|ref|NP_414562.1| IS1 transposase B (insB b0021 exp) [Escherichia coli str. K-12 substr. MG1655] 167 SCOP206 46-158 -12.500 15  d3kkra1 c.55.3.0 (A:60-208) automated matches {Bovine immunodeficiency virus [TaxId: 417296]}


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Zhao Y, Hong DH, Pawlyk B, Yue G, Adamian M, Grynberg M, Godzik A., Li T. The retinitis pigmentosa GTPase regulator (RPGR)- interacting protein: subserving RPGR function and participating in disk morphogenesis. Proc Natl Acad Sci U S A. 2003 Apr 1;100(7):3965-70. Epub 2003 Mar 21.