current user: public

anford Burnham Prebys Medical Discovery Institute
We are hiring bioinformatics experts and software developers. Join us!

Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:

Page size:   Sort by score   Show only entries containing string:

Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 3877next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 ACL93468.1 301 HGM_OVER 135-294 -5.830 12  PB047024 _Gut.Meta.Jp.0098985_ gi|162869273|dbj|BABB01000734.1||6 (+ 5047:5650~0 complete)
2 ACL93469.1 199 HGM_OVER 56-182 -4.230 12  HGC00789 gi|163310627|dbj|BABD01000073.1|7.0 TMP01036;
3 ACL93470.1 285 HGM_OVER 49-187 -4.100 PB003645 Q65HI2_BACLD/1-230 PB003645; Pfam-B_3645;
4 ACL93471.1 199 HGM_OVER 129-192 -3.210 12  HGC00311 gi|163635536|dbj|BABG01000737.1|2.0 TMP00178;
5 ACL93472.1 237 HGM_OVER 47-155 -4.320 11  PB001572 gi|163816107|ref|ZP_02207475.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]gi|158448527|gb|EDP25522.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]
6 ACL93473.1 262 HGM_OVER 24-143 -2.980 16  PB003645 Q65HI2_BACLD/1-230 PB003645; Pfam-B_3645;
7 ACL93474.1 96 HGM_OVER 6-96 -4.040 15  PB076697 gi|160881556|ref|YP_001560524.1| hypothetical protein Cphy_3432 [Clostridium phytofermentans ISDg]gi|160430222|gb|ABX43785.1| conserved hypothetical protein [Clostridium phytofermentans ISDg]
8 ACL93475.1 490 HGM_OVER 345-487 -3.190 13  PB007733 A3U921_9FLAO/1-209 PB007733; Pfam-B_7733;
9 ACL93476.1 206 HGM_OVER 61-177 -4.190 12  PB015879 Q5LJ14_BACFN/120-411 PB015879; Pfam-B_15879;
10 ACL93477.1 631 HGM_OVER 115-490 -4.260 11  PB162065 _Gut.Meta.Jp.0089312_ gi|162832207|dbj|BABA01012502.1||1 (- 0:1326~0 complete)
11 ACL93478.1 385 HGM_OVER 127-226 -4.680 15  HGC00991 gi|163600283|dbj|BABF01000984.1|3.0 TMP01348;
12 ACL93479.1 903 HGM_OVER 490-631 -3.870 PB006791 A6TXD6_9CLOT/1-181 PB006791; Pfam-B_6791;
13 ACL93480.1 940 HGM_OVER 492-678 -5.650 10  PB047024 _Gut.Meta.Jp.0098985_ gi|162869273|dbj|BABB01000734.1||6 (+ 5047:5650~0 complete)
14 ACL93481.1 158 HGM_OVER 34-149 -3.780 16  HGC00962 gi|162759780|dbj|BAAZ01005693.1|3.0 TMP01305;
15 ACL93482.1 183 HGM_OVER 21-116 -4.840 12  HGC00267 gi|163310129|dbj|BABD01000566.1|6.0 TMP00066;
16 ACL93483.1 150 HGM_OVER 79-146 -5.400 14  PB047024 _Gut.Meta.Jp.0098985_ gi|162869273|dbj|BABB01000734.1||6 (+ 5047:5650~0 complete)
17 ACL93484.1 79 HGM_OVER 3-77 -3.330 10  PB038151 Q8A4A5_BACTN/1-178 PB038151; Pfam-B_38151;
18 ACL93485.1 349 HGM_OVER 31-257 -3.730 12  HGC00921 gi|162841401|dbj|BABA01003308.1|3.0 TMP01242;
19 ACL93486.1 210 HGM_OVER 92-151 -3.150 20  PB155142 _HOMD.0127537_ bfor_c_1_1790 Tannerella forsythia ATCC 43037 [677748 - 680894] ORF
20 ACL93487.1 74 HGM_OVER 19-65 -4.890 14  PB062605 Q9F6T7_BACTN/1-105 PB062605; Pfam-B_62605;


FFAS is supported by the NIH grant R01-GM087218-01
1 0 1 6 1 6   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40.