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# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|15894240|ref|NP_347589.1| hypothetical protein (CA_C0953) [Clostridium acetobutylicum ATCC 824] (Range: 1-132) 132 COG0516 42-132 -6.580 10  [R] KOG1030 Predicted Ca2+-dependent phospholipid-binding protein
2 gi|15895268|ref|NP_348617.1| ABC-type transport system, ATPase component (CA_C1998) [Clostridium acetobutylicum ATCC 824] (Range: 1-224) 224 COG0516 2-224 -100.000 40  [Q] COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component
3 gi|15895079|ref|NP_348428.1| ribosome-binding factor A (CA_C1803) [Clostridium acetobutylicum ATCC 824] (Range: 1-121) 121 COG0516 5-121 -64.400 31  [J] COG0858 Ribosome-binding factor A
4 gi|15896238|ref|NP_349587.1| dimethyladenosine transferase (CA_C2986) [Clostridium acetobutylicum ATCC 824] (Range: 1-276) 276 COG0516 2-276 -91.000 29  [A] KOG0821 Predicted ribosomal RNA adenine dimethylase
5 gi|15894673|ref|NP_348022.1| phosphoribosylglycinamide formyltransferase (CA_C1394) [Clostridium acetobutylicum ATCC 824] (Range: 1-204) 204 COG0516 2-203 -88.300 34  [F] COG0299 Folate-dependent phosphoribosylglycinamide formyltransferase PurN
6 gi|15894664|ref|NP_348013.1| Alpha-ribazole-5'-phosphate phosphatase, CobC (CA_C1385) [Clostridium acetobutylicum ATCC 824] (Range: 1-191) 191 COG0516 1-191 -67.700 18  [G] COG0406 Fructose-2,6-bisphosphatase
7 gi|15894369|ref|NP_347718.1| Beta-glucosidase family protein (CA_C1084) [Clostridium acetobutylicum ATCC 824] (Range: 1-474) 474 COG0516 1-470 -140.000 40  [G] COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase
8 gi|15896898|ref|NP_350247.1| alpha/beta fold family hydrolase (CA_C3665) [Clostridium acetobutylicum ATCC 824] (Range: 1-265) 265 COG0516 3-264 -66.000 27  [I] KOG4667 Predicted esterase
9 gi|15895531|ref|NP_348880.1| ATP-dependent exonuclease synthesis protein AddB (CA_C2263) [Clostridium acetobutylicum ATCC 824] (Range: 1-500) 500 COG0516 1-500 -127.000 29  [L] COG3857 ATP-dependent nuclease, subunit B
10 gi|15895531|ref|NP_348880.1| ATP-dependent exonuclease synthesis protein AddB (CA_C2263) [Clostridium acetobutylicum ATCC 824] (Range: 251-750) 500 COG0516 1-500 -120.000 30  [L] COG3857 ATP-dependent nuclease, subunit B
11 gi|15895531|ref|NP_348880.1| ATP-dependent exonuclease synthesis protein AddB (CA_C2263) [Clostridium acetobutylicum ATCC 824] (Range: 501-1000) 500 COG0516 1-500 -149.000 32  [L] COG3857 ATP-dependent nuclease, subunit B
12 gi|15895531|ref|NP_348880.1| ATP-dependent exonuclease synthesis protein AddB (CA_C2263) [Clostridium acetobutylicum ATCC 824] (Range: 751-1153) 403 COG0516 1-396 -119.000 35  [L] COG3857 ATP-dependent nuclease, subunit B
13 gi|15895492|ref|NP_348841.1| chemotaxis protein CheW (CA_C2224) [Clostridium acetobutylicum ATCC 824] (Range: 1-147) 147 COG0516 2-141 -41.900 20  [NT] COG0835 Chemotaxis signal transduction protein
14 gi|15894672|ref|NP_348021.1| phosphoribosylaminoimidazole synthetase (CA_C1393) [Clostridium acetobutylicum ATCC 824] (Range: 1-332) 332 COG0516 2-328 -120.000 52  [F] COG0150 Phosphoribosylaminoimidazole (AIR) synthetase
15 gi|15893880|ref|NP_347229.1| riboflavin synthase subunit alpha (CA_C0591) [Clostridium acetobutylicum ATCC 824] (Range: 1-213) 213 COG0516 1-201 -97.500 35  [H] KOG3310 Riboflavin synthase alpha chain
16 gi|15893578|ref|NP_346927.1| hypothetical protein (CA_C0286) [Clostridium acetobutylicum ATCC 824] (Range: 1-244) 244 COG0516 1-244 -90.400 18  [S] COG4200 Uncharacterized protein conserved in bacteria
17 gi|15896862|ref|NP_350211.1| oligopeptide ABC transporter, ATPase component (CA_C3628) [Clostridium acetobutylicum ATCC 824] (Range: 1-322) 322 COG0516 7-322 -140.000 52  [E] COG4608 ABC-type oligopeptide transport system, ATPase component
18 gi|15895331|ref|NP_348680.1| segregation and condensation protein A (CA_C2061) [Clostridium acetobutylicum ATCC 824] (Range: 1-249) 249 COG0516 2-249 -87.200 29  [S] COG1354 Uncharacterized conserved protein
19 gi|15894096|ref|NP_347445.1| hydrogenase formation factor (hypE) (CA_C0809) [Clostridium acetobutylicum ATCC 824] (Range: 1-335) 335 COG0516 2-335 -111.000 51  [O] COG0309 Hydrogenase maturation factor
20 gi|15895945|ref|NP_349294.1| DNA helicase (CA_C2687) [Clostridium acetobutylicum ATCC 824] (Range: 1-714) 714 COG0516 1-593 -157.000 39  [L] COG0514 Superfamily II DNA helicase
1-714 -31.800 16  [R] COG1201 Lhr-like helicases


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Alonso A, Sasin J, Bottini N, Friedberg I, Friedberg I, Osterman A, Godzik A., Hunter T, Dixon J, Mustelin T. Protein tyrosine phosphatases in the human genome. Cell. 2004 Jun 11;117(6):699-711. Review.