current user: public




Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:

Page size:   Sort by score   Show only entries containing string:

Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 4053next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|15894240|ref|NP_347589.1| hypothetical protein (CA_C0953) [Clostridium acetobutylicum ATCC 824] (Range: 1-132) 132 COG1214 46-126 -6.130 11  [S] COG4837 Uncharacterized protein conserved in bacteria
H.sapiens 43-132 -8.840 15  sp|Q9HC10|OTOF_HUMAN Otoferlin OS=Homo sapiens GN=OTOF PE=1 SV=3 (Range: 901-1200)
HGM_OVER 1-124 -4.790 13  PB000119 Q6KIT1_MYCMO/1-381 PB000119; Pfam-B_119;
JCSG1214 9-128 -7.650 13  GS13573A NP_812825.1 384720 Purified-2008-05-02
NEW_HUMAN_DOMAINS 35-106 -6.570 15  sp|A4D997|CI102_HUMAN Uncharacterized protein C9orf102 OS=Homo sapiens GN=C9orf102 PE=1 SV=3 (Range: 175-256)
PDB1214 26-132 -8.180 10  3kwt_A mol:protein length:148 Munc13-1
PfamA27U 44-106 -7.850 12  PF00168.25; Q9LS53_ARATH/577-655; C2 domain
SCOP175 44-132 -6.440 15  d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]}
VFDB 8-130 -4.710 VFG0803 (gi:15804220) eae - intimin adherence protein [Escherichia coli O157:H7 EDL933] (VF0202)
2 gi|15895268|ref|NP_348617.1| ABC-type transport system, ATPase component (CA_C1998) [Clostridium acetobutylicum ATCC 824] (Range: 1-224) 224 COG1214 2-224 -99.600 40  [Q] COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component
H.sapiens 2-222 -49.000 23  sp|Q86UQ4|ABCAD_HUMAN ATP-binding cassette sub-family A member 13 OS=Homo sapiens GN=ABCA13 PE=2 SV=2 (Range: 4651-4950)
HGM_OVER 36-202 -3.840 12  PB005684 gi|160884252|ref|ZP_02065255.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]gi|156109991|gb|EDO11736.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]
JCSG1214 1-224 -117.000 47  TM0352 TM0352 282227 Purified-2001-03-14
NEW_HUMAN_DOMAINS 90-164 -5.480 12  sp|C9JH25|PRRT4_HUMAN Proline-rich transmembrane protein 4 OS=Homo sapiens GN=PRRT4 PE=2 SV=1 (Range: 535-696)
PDB1214 4-224 -113.000 50  1f3o_A mol:protein length:235 HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROT
PfamA27U 18-215 -17.000 14  PF10443.4; Q5B2U3_EMENI/373-791; RNA12 protein
24-173 -42.700 28  PF00005.22; YTFR_ECOLI/25-174; ABC transporter
SCOP175 4-224 -114.000 49  d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
VFDB 12-219 -101.000 36  VFG0869 (gi:34148232) aatC - AatC ATB binding protein of ABC transporter [Escherichia coli 042] (VF0215)
3 gi|15895079|ref|NP_348428.1| ribosome-binding factor A (CA_C1803) [Clostridium acetobutylicum ATCC 824] (Range: 1-121) 121 COG1214 5-121 -64.100 31  [J] COG0858 Ribosome-binding factor A
H.sapiens 1-121 -41.300 17  sp|Q8N0V3|RBFAL_HUMAN Putative ribosome-binding factor A, mitochondrial OS=Homo sapiens GN=C18orf22 PE=1 SV=3
HGM_OVER 1-108 -3.760 13  PB027778 Q5LHJ0_BACFN/1-110 PB027778; Pfam-B_27778;
JCSG1214 2-121 -63.000 30  TM0855 TM0855 282725 PDB-2010-06-16
NEW_HUMAN_DOMAINS 2-62 -6.590 15  sp|Q9H2U1|DHX36_HUMAN Probable ATP-dependent RNA helicase DHX36 OS=Homo sapiens GN=DHX36 PE=1 SV=2 (Range: 935-1008)
PDB1214 1-118 -64.200 19  1pa4_A mol:protein length:116 Probable ribosome-binding factor A
PfamA27U 5-109 -61.000 33  PF02033.13; A3Y8H6_9GAMM/7-113; Ribosome-binding factor A
SCOP175 5-103 -58.100 39  d1josa_ d.52.7.1 (A:) Ribosome-binding factor A, RbfA {Haemophilus influenzae [TaxId: 727]}
VFDB 5-65 -5.080 11  VFG0662 (gi:24114262) SF2998 - orf, conserved hypothetical protein [Shigella flexneri (serotype 2a) 301]
4 gi|15896238|ref|NP_349587.1| dimethyladenosine transferase (CA_C2986) [Clostridium acetobutylicum ATCC 824] (Range: 1-276) 276 COG1214 2-276 -94.900 29  [A] KOG0821 Predicted ribosomal RNA adenine dimethylase
H.sapiens 2-276 -94.900 29  sp|Q8WVM0|TFB1M_HUMAN Dimethyladenosine transferase 1, mitochondrial OS=Homo sapiens GN=TFB1M PE=1 SV=1
HGM_OVER 61-249 -3.920 12  PB023890 Q7MUU3_PORGI/1-263 PB023890; Pfam-B_23890;
JCSG1214 2-276 -109.000 37  TM1437 TM1437 283297 Purified-2004-02-02
NEW_HUMAN_DOMAINS 24-150 -7.000 13  tr|E9PL53|E9PL53_HUMAN Uncharacterized protein OS=Homo sapiens GN=SAAL1 PE=4 SV=1 (Range: 69-209)
PDB1214 2-276 -109.000 34  3grr_A mol:protein length:295 Dimethyladenosine transferase
PfamA27U 15-269 -93.200 25  PF00398.15; DIM1_YEAST/27-282; Ribosomal RNA adenine dimethylase
SCOP175 23-276 -102.000 34  d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}
VFDB 41-224 -9.090 11  VFG1954 (gi:15792744) Cj1426c - hypothetical protein Cj1426c [Campylobacter jejuni NCTC 11168] (VF0323)
5 gi|15894673|ref|NP_348022.1| phosphoribosylglycinamide formyltransferase (CA_C1394) [Clostridium acetobutylicum ATCC 824] (Range: 1-204) 204 COG1214 2-203 -88.500 34  [F] COG0299 Folate-dependent phosphoribosylglycinamide formyltransferase PurN
H.sapiens 1-202 -83.200 40  sp|P22102|PUR2_HUMAN Trifunctional purine biosynthetic protein adenosine-3 OS=Homo sapiens GN=GART PE=1 SV=1 (Range: 751-1010)
HGM_OVER 16-157 -4.210 11  HGC00422 gi|163631722|dbj|BABG01004545.1|2.0 TMP00397;
JCSG1214 1-204 -81.400 40  TM1248 TM1248 283113 Crystal|NMR-2004-02-09
NEW_HUMAN_DOMAINS 83-146 -6.540 21  sp|Q8IWZ3|ANKH1_HUMAN Ankyrin repeat and KH domain-containing protein 1 OS=Homo sapiens GN=ANKHD1 PE=1 SV=1 (Range: 2450-2542)
PDB1214 1-203 -89.200 35  3tqr_A mol:protein length:215 Phosphoribosylglycinamide formyltransferase
PfamA27U 2-185 -86.600 40  PF00551.14; PUR2_DROME/1154-1336; Formyl transferase
SCOP175 2-203 -88.500 34  d1jkxa_ c.65.1.1 (A:) Glycinamide ribonucleotide transformylase, GART {Escherichia coli [TaxId: 562]}
VFDB 1-199 -30.700 21  VFG2230 (gi:17987701) wbkC - GDP-mannose 4,6-dehydratase / GDP-4-amino-4,6-dideoxy-D-mannose formyltransferase [Brucella melitensis 16M] (VF0367)
6 gi|15894664|ref|NP_348013.1| Alpha-ribazole-5'-phosphate phosphatase, CobC (CA_C1385) [Clostridium acetobutylicum ATCC 824] (Range: 1-191) 191 COG1214 1-191 -74.900 19  [G] COG0406 Fructose-2,6-bisphosphatase
H.sapiens 2-190 -69.200 23  sp|Q9NQ88|TIGAR_HUMAN Probable fructose-2,6-bisphosphatase TIGAR OS=Homo sapiens GN=TIGAR PE=1 SV=1
HGM_OVER 29-139 -4.680 16  PB000716 Q60CS7_METCA/1-294 PB000716; Pfam-B_716;
JCSG1214 2-191 -86.800 33  TM1374 TM1374 283235 Purified-2004-01-08
NEW_HUMAN_DOMAINS 49-118 -6.590 10  sp|Q76KP1|B4GN4_HUMAN N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase 1 OS=Homo sapiens GN=B4GALNT4 PE=1 SV=1 (Range: 321-408)
PDB1214 1-191 -96.300 29  4ij5_A mol:protein length:211 Phosphoserine phosphatase 1
PfamA27U 3-152 -43.500 26  PF00300.17; Q756M6_ASHGO/9-242; Histidine phosphatase superfamily (branch 1)
SCOP175 2-191 -92.200 25  d1h2ea_ c.60.1.1 (A:) Broad specificity phosphatase PhoE (YhfR) {Bacillus stearothermophilus [TaxId: 1422]}
VFDB 41-159 -7.410 12  VFG0869 (gi:34148232) aatC - AatC ATB binding protein of ABC transporter [Escherichia coli 042] (VF0215)
7 gi|15894369|ref|NP_347718.1| Beta-glucosidase family protein (CA_C1084) [Clostridium acetobutylicum ATCC 824] (Range: 1-474) 474 COG1214 1-470 -134.000 40  [G] COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase
H.sapiens 4-468 -85.500 31  sp|Q9H227|GBA3_HUMAN Cytosolic beta-glucosidase OS=Homo sapiens GN=GBA3 PE=1 SV=2
HGM_OVER 352-472 -4.050 PB006791 A6TXD6_9CLOT/1-181 PB006791; Pfam-B_6791;
JCSG1214 29-454 -13.000 15  TM1752 TM1752 283607 PDB-2004-04-08
59-469 -18.400 16  TT16503A YP_001636660.1 403870 Selected-2009-08-14
NEW_HUMAN_DOMAINS 58-133 -5.880 19  sp|P78312|F193A_HUMAN Protein FAM193A OS=Homo sapiens GN=FAM193A PE=1 SV=2 (Range: 409-480)
PDB1214 2-471 -137.000 40  3pn8_A mol:protein length:480 Putative phospho-beta-glucosidase
PfamA27U 1-469 -135.000 39  PF00232.13; ARBB_ERWCH/1-461; Glycosyl hydrolase family 1
SCOP175 1-470 -114.000 35  d1pbga_ c.1.8.4 (A:) 6-phospho-beta-D-galactosidase, PGAL {Lactococcus lactis [TaxId: 1358]}
VFDB 6-472 -4.880 11  VFG1396 (gi:15609045) katG - katG [Mycobacterium tuberculosis H37Rv] (VF0303)
8 gi|15896898|ref|NP_350247.1| alpha/beta fold family hydrolase (CA_C3665) [Clostridium acetobutylicum ATCC 824] (Range: 1-265) 265 COG1214 3-264 -64.200 27  [I] KOG4667 Predicted esterase
H.sapiens 1-263 -60.900 17  sp|Q9NUJ1|ABHDA_HUMAN(removed signalp:1-21) Abhydrolase domain-containing protein 10, mitochondrial OS=Homo sapiens GN=ABHD10 PE=1 SV=1
HGM_OVER 3-94 -2.780 10  PB017124 _Gut.Meta.Jp.0039711_ gi|162659581|dbj|BAAX01000024.1||2 (+ 385:1498~0 complete)
JCSG1214 1-264 -69.800 21  FN4107C YP_546482.1 379496 Diffraction|HSQC-2007-11-01
NEW_HUMAN_DOMAINS 28-77 -8.370 14  tr|F8WBB3|F8WBB3_HUMAN Uncharacterized protein OS=Homo sapiens GN=ABHD1 PE=4 SV=1 (Range: 22-102)
PDB1214 8-264 -76.000 29  2wtm_A mol:protein length:251 EST1E
PfamA27U 7-262 -50.400 17  PF02273.10; LUXD2_PHOLU/8-301; Acyl transferase
SCOP175 6-264 -49.400 16  d1thta_ c.69.1.13 (A:) Myristoyl-ACP-specific thioesterase {Vibrio harveyi [TaxId: 669]}
VFDB 5-260 -32.900 13  VFG0156 (gi:15598675) rhlA - rhamnosyltransferase chain A [Pseudomonas aeruginosa PAO1] (VF0089)
9 gi|15895531|ref|NP_348880.1| ATP-dependent exonuclease synthesis protein AddB (CA_C2263) [Clostridium acetobutylicum ATCC 824] (Range: 1-500) 500 COG1214 1-500 -116.000 29  [L] COG3857 ATP-dependent nuclease, subunit B
H.sapiens 6-235 -9.360 13  sp|Q8NFZ0|FBX18_HUMAN F-box only protein 18 OS=Homo sapiens GN=FBXO18 PE=1 SV=2 (Range: 451-750)
HGM_OVER 3-149 -2.710 PB006791 A6TXD6_9CLOT/1-181 PB006791; Pfam-B_6791;
JCSG1214 5-499 -18.300 15  TM1238 TM1238 283103 Purified-2004-02-02
NEW_HUMAN_DOMAINS 324-406 -5.050 10  sp|Q71RC2|LARP4_HUMAN La-related protein 4 OS=Homo sapiens GN=LARP4 PE=1 SV=3 (Range: 273-354)
PDB1214 1-500 -123.000 29  3u44_B mol:protein length:1166 ATP-dependent helicase/deoxyribonuclease subu
PfamA27U 3-497 -15.600 11  PF04257.9; C4ZZX4_ECOBW/1-836; Exodeoxyribonuclease V, gamma subunit
SCOP175 5-419 -15.300 16  g1qhh.1 c.37.1.19 (A:,B:,C:,D:) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}
276-497 -18.300 14  d1w36c2 c.37.1.19 (C:348-817) Exodeoxyribonuclease V gamma chain (RecC), N-terminal domain {Escherichia coli [TaxId: 562]}
VFDB 5-490 -6.530 VFG1844 (gi:52840701) icmB - IcmB (DotO) [Legionella pneumophila Philadelphia 1] (VF0156)
10 gi|15895531|ref|NP_348880.1| ATP-dependent exonuclease synthesis protein AddB (CA_C2263) [Clostridium acetobutylicum ATCC 824] (Range: 251-750) 500 COG1214 1-500 -111.000 30  [L] COG3857 ATP-dependent nuclease, subunit B
H.sapiens 199-425 -6.740 10  sp|Q8NFZ0|FBX18_HUMAN F-box only protein 18 OS=Homo sapiens GN=FBXO18 PE=1 SV=2 (Range: 751-1043)
HGM_OVER 280-384 -2.870 15  PB035451 Q3Z7G7_DEHE1/1-135 PB035451; Pfam-B_35451;
JCSG1214 1-433 -14.000 15  TM1238 TM1238 283103 Purified-2004-02-02
NEW_HUMAN_DOMAINS 300-432 -5.400 12  sp|P55268|LAMB2_HUMAN Laminin subunit beta-2 OS=Homo sapiens GN=LAMB2 PE=1 SV=2 (Range: 576-746)
PDB1214 1-500 -113.000 30  3u44_B mol:protein length:1166 ATP-dependent helicase/deoxyribonuclease subu
PfamA27U 30-429 -24.400 14  PF04257.9; C4ZZX4_ECOBW/1-836; Exodeoxyribonuclease V, gamma subunit
SCOP175 26-500 -37.800 13  d1w36c2 c.37.1.19 (C:348-817) Exodeoxyribonuclease V gamma chain (RecC), N-terminal domain {Escherichia coli [TaxId: 562]}
VFDB 62-345 -5.250 13  VFG1447 (gi:403299) cnf1 - cytotoxic necrotizing factor 1 [Escherichia coli] (VF0240)
11 gi|15895531|ref|NP_348880.1| ATP-dependent exonuclease synthesis protein AddB (CA_C2263) [Clostridium acetobutylicum ATCC 824] (Range: 501-1000) 500 COG1214 1-500 -133.000 32  [L] COG3857 ATP-dependent nuclease, subunit B
H.sapiens 115-495 -10.500 12  sp|Q9BQP7|CT072_HUMAN Uncharacterized protein C20orf72 OS=Homo sapiens GN=C20orf72 PE=1 SV=1
HGM_OVER 30-134 -3.140 15  PB035451 Q3Z7G7_DEHE1/1-135 PB035451; Pfam-B_35451;
JCSG1214 255-480 -14.300 15  FR14749B NP_816462.1 392602 Crystal|NMR-2009-05-21
NEW_HUMAN_DOMAINS 314-454 -6.120 12  tr|B4DQ88|B4DQ88_HUMAN Uncharacterized protein OS=Homo sapiens GN=EMR2 PE=2 SV=1 (Range: 1-160)
PDB1214 1-500 -135.000 32  3u44_B mol:protein length:1166 ATP-dependent helicase/deoxyribonuclease subu
PfamA27U 247-498 -17.700 17  PF06023.7; Q96X76_SULTO/1-279; Archaeal protein of unknown function (DUF911 topsan)
276-495 -45.800 18  PF12705.2; B5D322_9BACE/660-959; PD-(D/E)XK nuclease superfamily
SCOP175 1-250 -17.400 13  d1w36c2 c.37.1.19 (C:348-817) Exodeoxyribonuclease V gamma chain (RecC), N-terminal domain {Escherichia coli [TaxId: 562]}
307-497 -9.680 15  d1w36b3 c.52.1.24 (B:899-1174) Exodeoxyribonuclease V beta chain (RecB), C-terminal domain {Escherichia coli [TaxId: 562]}
VFDB 37-498 -4.810 10  VFG2383 (gi:15611007) Rv3871 - hypothetical protein [Mycobacterium tuberculosis H37Rv] (VF0315)
12 gi|15895531|ref|NP_348880.1| ATP-dependent exonuclease synthesis protein AddB (CA_C2263) [Clostridium acetobutylicum ATCC 824] (Range: 751-1153) 403 COG1214 1-396 -107.000 35  [L] COG3857 ATP-dependent nuclease, subunit B
H.sapiens 26-384 -17.900 14  sp|Q9H790|DEM1_HUMAN Defects in morphology protein 1 homolog OS=Homo sapiens GN=DEM1 PE=2 SV=1
HGM_OVER 187-328 -3.120 11  PB003142 Q8DVS6_STRMU/1-162 PB003142; Pfam-B_3142;
JCSG1214 5-264 -14.800 14  FR14749B NP_816462.1 392602 Crystal|NMR-2009-05-21
14-363 -14.800 16  TB5245A 13816693 358056 Purified-2004-06-03
NEW_HUMAN_DOMAINS 64-204 -5.840 12  tr|B4DQ88|B4DQ88_HUMAN Uncharacterized protein OS=Homo sapiens GN=EMR2 PE=2 SV=1 (Range: 1-160)
PDB1214 1-398 -111.000 35  3u44_B mol:protein length:1166 ATP-dependent helicase/deoxyribonuclease subu
PfamA27U 26-364 -60.200 17  PF12705.2; B5D322_9BACE/660-959; PD-(D/E)XK nuclease superfamily
SCOP175 57-292 -10.200 15  d1w36b3 c.52.1.24 (B:899-1174) Exodeoxyribonuclease V beta chain (RecB), C-terminal domain {Escherichia coli [TaxId: 562]}
VFDB 12-270 -4.990 VFG0441 (gi:17233493) spvR - Salmonella plasmid virulence: regulation of spv operon, lysR family [Salmonella enterica (serovar typhimurium) LT2] (VF0107)
13 gi|15895492|ref|NP_348841.1| chemotaxis protein CheW (CA_C2224) [Clostridium acetobutylicum ATCC 824] (Range: 1-147) 147 COG1214 2-141 -44.100 21  [NT] COG0835 Chemotaxis signal transduction protein
H.sapiens 14-54 -7.450 17  sp|O95411|TIAF1_HUMAN TGFB1-induced anti-apoptotic factor 1 OS=Homo sapiens GN=TIAF1 PE=2 SV=2
HGM_OVER 1-56 -3.000 12  PB039305 _Gut.Meta.Jp.0057508_ gi|162726131|dbj|BAAY01002830.1||2 (- 1092:1581~0 complete)
JCSG1214 1-147 -78.200 39  TM0718 TM0718 282588 Purified-2001-02-28
NEW_HUMAN_DOMAINS 21-53 -5.400 21  sp|Q9H1P6|CT085_HUMAN Uncharacterized protein C20orf85 OS=Homo sapiens GN=C20orf85 PE=2 SV=1 (Range: 73-137)
PDB1214 2-147 -76.300 32  2ho9_A mol:protein length:167 Chemotaxis protein cheW
PfamA27U 8-143 -18.500 16  PF01584.14; Q8XQ78_RALSO/559-691; CheW-like domain
SCOP175 3-144 -63.700 29  d2ch4w1 b.40.7.1 (W:9-147) Chemotaxis protein CheW {Thermotoga maritima [TaxId: 2336]}
VFDB 2-147 -62.100 19  VFG1227 (gi:15595607) pilI - twitching motility protein PilI [Pseudomonas aeruginosa PAO1] (VF0082)
14 gi|15894672|ref|NP_348021.1| phosphoribosylaminoimidazole synthetase (CA_C1393) [Clostridium acetobutylicum ATCC 824] (Range: 1-332) 332 COG1214 2-328 -119.000 52  [F] COG0150 Phosphoribosylaminoimidazole (AIR) synthetase
H.sapiens 9-331 -17.800 15  sp|Q99611|SPS2_HUMAN Selenide, water dikinase 2 OS=Homo sapiens GN=SEPHS2 PE=1 SV=3
18-306 -105.000 48  sp|P22102|PUR2_HUMAN Trifunctional purine biosynthetic protein adenosine-3 OS=Homo sapiens GN=GART PE=1 SV=1 (Range: 451-750)
HGM_OVER 96-243 -2.790 11  PB007147 Q11UU2_CYTH3/1-245 PB007147; Pfam-B_7147;
JCSG1214 2-327 -98.300 34  TM1251 TM1251 283116 Purified-2004-01-21
NEW_HUMAN_DOMAINS 71-153 -5.240 18  sp|Q9UHV7|MED13_HUMAN Mediator of RNA polymerase II transcription subunit 13 OS=Homo sapiens GN=MED13 PE=1 SV=3 (Range: 1068-1151)
PDB1214 2-331 -120.000 49  1cli_A mol:protein length:345 PROTEIN (PHOSPHORIBOSYL-AMINOIMIDAZOLE SYNTHE
PfamA27U 38-136 -12.000 20  PF00586.19; A0LIX8_SYNFM/31-128; AIR synthase related protein, N-terminal domain
SCOP175 2-165 -88.000 53  d1clia1 d.79.4.1 (A:5-170) Aminoimidazole ribonucleotide synthetase (PurM) N-terminal domain {Escherichia coli [TaxId: 562]}
166-331 -69.000 45  d1clia2 d.139.1.1 (A:171-345) Aminoimidazole ribonucleotide synthetase (PurM) C-terminal domain {Escherichia coli [TaxId: 562]}
VFDB 101-288 -5.250 10  VFG1030 (gi:15808710) tnpR - resolvase TnpR [Shigella flexneri (serotype 2a) YSH6000]
15 gi|15893880|ref|NP_347229.1| riboflavin synthase subunit alpha (CA_C0591) [Clostridium acetobutylicum ATCC 824] (Range: 1-213) 213 COG1214 1-201 -95.600 35  [H] KOG3310 Riboflavin synthase alpha chain
H.sapiens 18-200 -7.450 10  sp|Q5JXA9|SIRB2_HUMAN(removed signalp:1-32) Signal-regulatory protein beta-2 OS=Homo sapiens GN=SIRPB2 PE=2 SV=1
HGM_OVER 129-213 -3.320 PB053359 gi|153891307|ref|ZP_02012332.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]gi|151582630|gb|EDN46158.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]
JCSG1214 1-199 -91.100 36  TM1827 TM1827 283680 Purified-2001-10-09
NEW_HUMAN_DOMAINS 6-158 -6.640 14  sp|Q9UH90|FBX40_HUMAN F-box only protein 40 OS=Homo sapiens GN=FBXO40 PE=1 SV=2 (Range: 382-551)
PDB1214 1-197 -99.900 38  4e0f_A mol:protein length:210 Riboflavin synthase subunit alpha
PfamA27U 97-179 -38.600 34  PF00677.12; RISA_HAEIN/3-87; Lumazine binding domain
SCOP175 1-94 -38.800 36  d1hzea_ b.43.4.3 (A:) Riboflavin synthase {Escherichia coli [TaxId: 562]}
90-197 -53.800 33  d1kzla2 b.43.4.3 (A:93-202) Riboflavin synthase {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
VFDB 3-185 -5.960 19  VFG1931 (gi:15792793) cadF - outer membrane fibronectin-binding protein [Campylobacter jejuni NCTC 11168] (VF0322)
16 gi|15893578|ref|NP_346927.1| hypothetical protein (CA_C0286) [Clostridium acetobutylicum ATCC 824] (Range: 1-244) 244 COG1214 1-244 -90.400 18  [S] COG4200 Uncharacterized protein conserved in bacteria
H.sapiens 1-179 -14.300 sp|P40145|ADCY8_HUMAN Adenylate cyclase type 8 OS=Homo sapiens GN=ADCY8 PE=1 SV=1 (Range: 1-300)
1-242 -11.800 sp|Q96N19|G137A_HUMAN(removed signalp:1-43) Integral membrane protein GPR137 OS=Homo sapiens GN=GPR137 PE=2 SV=2
HGM_OVER 63-164 -5.570 12  PB000520 Q9RVX4_DEIRA/1-194 PB000520; Pfam-B_520;
JCSG1214 2-243 -32.200 15  TM1029 TM1029 282896 Purified-2001-12-12
NEW_HUMAN_DOMAINS 52-107 -5.760 sp|Q9Y239|NOD1_HUMAN Nucleotide-binding oligomerization domain-containing protein 1 OS=Homo sapiens GN=NOD1 PE=1 SV=1 (Range: 368-432)
PDB1214 9-238 -7.250 4jkv_A mol:protein length:475 Soluble cytochrome b562, Smoothened homolog
PfamA27U 7-238 -73.800 13  PF12730.2; B6FXG5_9FIRM/10-245; ABC-2 family transporter protein
SCOP175 73-118 -5.570 d2vkwa2 b.1.2.1 (A:601-693) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]}
VFDB 4-244 -15.700 12  VFG1813 (gi:15610075) drrC - drrC [Mycobacterium tuberculosis H37Rv] (VF0309)
17 gi|15896862|ref|NP_350211.1| oligopeptide ABC transporter, ATPase component (CA_C3628) [Clostridium acetobutylicum ATCC 824] (Range: 1-322) 322 COG1214 7-322 -137.000 52  [E] COG4608 ABC-type oligopeptide transport system, ATPase component
H.sapiens 2-282 -30.500 20  sp|O94911|ABCA8_HUMAN ATP-binding cassette sub-family A member 8 OS=Homo sapiens GN=ABCA8 PE=1 SV=3 (Range: 1201-1500)
11-254 -38.600 28  sp|Q9NRK6|ABCBA_HUMAN ATP-binding cassette sub-family B member 10, mitochondrial OS=Homo sapiens GN=ABCB10 PE=1 SV=2 (Range: 451-738)
HGM_OVER 91-277 -3.240 10  HGC00962 gi|162759780|dbj|BAAZ01005693.1|3.0 TMP01305;
JCSG1214 2-322 -135.000 54  TM1750 TM1750 283605 Purified-2004-07-19
NEW_HUMAN_DOMAINS 205-320 -5.020 22  sp|P49640|EVX1_HUMAN Homeobox even-skipped homolog protein 1 OS=Homo sapiens GN=EVX1 PE=2 SV=1 (Range: 266-354)
PDB1214 8-322 -94.500 32  4fwi_B mol:protein length:334 ABC-type dipeptide/oligopeptide/nickel transp
PfamA27U 31-183 -28.800 24  PF00005.22; YTFR_ECOLI/25-174; ABC transporter
39-218 -12.700 15  PF13401.1; B2UJB3_RALPJ/42-210; AAA domain
234-301 -38.400 32  PF08352.7; A4D7W3_PROAA/243-312; Oligopeptide/dipeptide transporter, C-terminal region
SCOP175 10-254 -63.200 34  d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}
39-293 -10.600 12  d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}
VFDB 8-287 -50.200 31  VFG1206 (gi:15677997) fbpC - iron(III) ABC transporter, ATP-binding protein [Neisseria meningitidis MC58 (serogroup B)] (VF0272)
18 gi|15895331|ref|NP_348680.1| segregation and condensation protein A (CA_C2061) [Clostridium acetobutylicum ATCC 824] (Range: 1-249) 249 COG1214 2-249 -87.100 29  [S] COG1354 Uncharacterized conserved protein
H.sapiens 82-247 -15.300 sp|O60216|RAD21_HUMAN Double-strand-break repair protein rad21 homolog OS=Homo sapiens GN=RAD21 PE=1 SV=2 (Range: 451-631)
HGM_OVER 34-228 -5.990 PB013946 A7ABR4_9PORP/121-442 PB013946; Pfam-B_13946;
JCSG1214 1-249 -97.000 35  PL5098B YP_384913.1 401502 Purified-2009-07-17
NEW_HUMAN_DOMAINS 13-193 -5.780 13  sp|Q86WV6|TM173_HUMAN Transmembrane protein 173 OS=Homo sapiens GN=TMEM173 PE=1 SV=1 (Range: 110-331)
PDB1214 1-163 -76.700 42  3w6j_A mol:protein length:174 ScpA
174-243 -17.700 24  4i99_C mol:protein length:87 Putative uncharacterized protein
PfamA27U 20-244 -86.400 38  PF02616.9; SCPA_BACSU/21-245; ScpA/B protein
SCOP175 208-243 -8.130 27  d1w1we_ a.4.5.57 (E:) Sister chromatid cohesion protein 1 (SCC1), C-terminal domain {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
VFDB 47-103 -5.410 12  VFG1212 (gi:15599752) pilE - type 4 fimbrial biogenesis protein PilE [Pseudomonas aeruginosa PAO1] (VF0082)
19 gi|15894096|ref|NP_347445.1| hydrogenase formation factor (hypE) (CA_C0809) [Clostridium acetobutylicum ATCC 824] (Range: 1-335) 335 COG1214 2-335 -109.000 51  [O] COG0309 Hydrogenase maturation factor
H.sapiens 1-315 -19.300 17  sp|P49903|SPS1_HUMAN Selenide, water dikinase 1 OS=Homo sapiens GN=SEPHS1 PE=1 SV=2
33-315 -19.900 18  sp|Q99611|SPS2_HUMAN Selenide, water dikinase 2 OS=Homo sapiens GN=SEPHS2 PE=1 SV=3
HGM_OVER 30-105 -2.530 13  PB006154 _JGI.0331794_ 2004021056 [Human Gut Community Subject 7]
JCSG1214 3-335 -100.000 44  FL10857A NP_281809.1 375685 Crystal|NMR-2007-06-16
NEW_HUMAN_DOMAINS 51-98 -4.840 30  sp|Q9NXD2|MTMRA_HUMAN Myotubularin-related protein 10 OS=Homo sapiens GN=MTMR10 PE=1 SV=3 (Range: 709-777)
PDB1214 2-335 -110.000 46  2z1t_A mol:protein length:343 Hydrogenase expression/formation protein HypE
PfamA27U 37-127 -18.700 20  PF00586.19; A0LIX8_SYNFM/31-128; AIR synthase related protein, N-terminal domain
162-311 -13.800 18  PF02769.17; PURL_STRCO/213-370; AIR synthase related protein, C-terminal domain
SCOP175 3-128 -12.900 13  d2zoda1 d.79.4.1 (A:3-154) Selenide, water dikinase SelD {Aquifex aeolicus [TaxId: 63363]}
38-151 -63.100 50  d2z1ea1 d.79.4.1 (A:43-155) Hydrogenase expression/formation protein HypE {Thermococcus kodakaraensis [TaxId: 311400]}
155-331 -70.500 41  d2z1ea2 d.139.1.1 (A:156-334) Hydrogenase expression/formation protein HypE {Thermococcus kodakaraensis [TaxId: 311400]}
VFDB 73-334 -4.910 VFG2313 (gi:123443692) pilQ - putative type IV pilus protein [Yersinia enterocolitica 8081] (VF0401)
20 gi|15895945|ref|NP_349294.1| DNA helicase (CA_C2687) [Clostridium acetobutylicum ATCC 824] (Range: 1-714) 714 COG1214 1-593 -153.000 39  [L] COG0514 Superfamily II DNA helicase
407-711 -29.200 15  [S] COG4955 Uncharacterized protein conserved in bacteria
H.sapiens 2-269 -81.600 40  sp|O94762|RECQ5_HUMAN ATP-dependent DNA helicase Q5 OS=Homo sapiens GN=RECQL5 PE=1 SV=2 (Range: 1-300)
69-365 -92.800 37  sp|Q14191|WRN_HUMAN Werner syndrome ATP-dependent helicase OS=Homo sapiens GN=WRN PE=1 SV=1 (Range: 601-900)
132-414 -89.900 33  sp|O94762|RECQ5_HUMAN ATP-dependent DNA helicase Q5 OS=Homo sapiens GN=RECQL5 PE=1 SV=2 (Range: 151-450)
217-495 -80.300 32  sp|Q14191|WRN_HUMAN Werner syndrome ATP-dependent helicase OS=Homo sapiens GN=WRN PE=1 SV=1 (Range: 751-1050)
272-555 -65.700 20  sp|O94762|RECQ5_HUMAN ATP-dependent DNA helicase Q5 OS=Homo sapiens GN=RECQL5 PE=1 SV=2 (Range: 301-600)
425-702 -49.700 18  sp|Q14191|WRN_HUMAN Werner syndrome ATP-dependent helicase OS=Homo sapiens GN=WRN PE=1 SV=1 (Range: 1051-1350)
HGM_OVER 38-152 -4.140 17  PB053359 gi|153891307|ref|ZP_02012332.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]gi|151582630|gb|EDN46158.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]
JCSG1214 1-388 -32.200 19  WT20667B.DDX6 BC065007 422785 Crystal|NMR-2011-11-15
1-424 -29.800 17  WS.A20813A.DDX21 BC008071 423980 PDB-2013-01-16
3-677 -18.100 13  TM0173 TM0173 282053 Cloned-2002-06-25
NEW_HUMAN_DOMAINS 44-148 -5.250 13  sp|Q6ZRS4|CC129_HUMAN Coiled-coil domain-containing protein 129 OS=Homo sapiens GN=CCDC129 PE=2 SV=2 (Range: 705-836)
PDB1214 2-606 -137.000 33  4cdg_A mol:protein length:673 BLOOM SYNDROME PROTEIN
591-713 -27.000 15  3iuo_A mol:protein length:122 ATP-dependent DNA helicase RecQ
PfamA27U 1-352 -13.700 13  PF06862.7; Q8H1E7_ARATH/308-753; Protein of unknown function (DUF1253 topsan)
19-185 -70.900 40  PF00270.24; SGS1_YEAST/680-854; DEAD/DEAH box helicase
31-650 -11.900 12  PF02399.10; OBP_EHV1V/51-880; Origin of replication binding protein
247-324 -25.000 29  PF00271.26; O01378_BOMMO/449-526; Helicase conserved C-terminal domain
334-400 -25.900 32  PF16124; E0WT16.1/346-410; RecQ zinc-binding
406-509 -37.400 29  PF09382.5; Q9ZHY4_NEIGO/406-509; RQC domain
518-585 -34.300 38  PF00570.18; Q8G567_BIFLO/575-642; HRDC domain
615-705 -20.300 25  PF14493.1; B8DBY3_LISMH/244-329; Helix-turn-helix domain
SCOP175 1-199 -83.400 46  d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]}
200-401 -82.600 38  d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]}
402-509 -37.200 24  d1oywa1 a.4.5.43 (A:407-516) DNA helicase RecQ DNA-binding domain {Escherichia coli [TaxId: 562]}
516-592 -38.100 37  d1wuda1 a.60.8.1 (A:530-606) HRDC domain from RecQ helicase {Escherichia coli [TaxId: 562]}
VFDB 3-575 -9.340 11  VFG1093 (gi:15641763) VC1760 - helicase, putative [Vibrio cholerae N16961]


FFAS is supported by the NIH grant R01-GM087218-01
6 4 5 1 8   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Locations of visitors to this page

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Zhang Q, Zmasek CM, Dishaw LJ, Mueller MG, Ye Y, Litman GW, Godzik A. Novel genes dramatically alter regulatory network topology in amphioxus. Genome Biol.2008 Aug 4;9(8):R123.