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# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|15894240|ref|NP_347589.1| hypothetical protein (CA_C0953) [Clostridium acetobutylicum ATCC 824] (Range: 1-132) 132 COG0516 42-132 -6.580 10  [R] KOG1030 Predicted Ca2+-dependent phospholipid-binding protein
H.sapiens 43-132 -9.450 15  sp|Q9HC10|OTOF_HUMAN Otoferlin OS=Homo sapiens GN=OTOF PE=1 SV=3 (Range: 901-1200)
HGM_OVER 1-124 -4.380 13  PB000119 Q6KIT1_MYCMO/1-381 PB000119; Pfam-B_119;
JCSG0516 6-122 -7.460 17  RH10501D ZP_02090074.1 415447 Selected-2009-12-04
NEW_HUMAN_DOMAINS 93-132 -6.720 22  tr|F8VX10|F8VX10_HUMAN Uncharacterized protein OS=Homo sapiens GN=C12orf41 PE=4 SV=1 (Range: 328-409)
PDB0516 26-132 -8.670 10  3kwt_A mol:protein length:148 Munc13-1
PfamA30U 42-132 -7.040 12  PF00168.28; BON3_ARATH/52-157; C2 domain
SCOP206 41-132 -8.760 13  d3kwua1 b.7.1.0 (A:687-819) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}
VFDB 7-129 -4.050 VFG000739(gi:2865299) (eae) intimin [Intimin (VF0177)] [Escherichia coli O127:H6 str. E2348/69]
2 gi|15895268|ref|NP_348617.1| ABC-type transport system, ATPase component (CA_C1998) [Clostridium acetobutylicum ATCC 824] (Range: 1-224) 224 COG0516 2-224 -100.000 40  [Q] COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component
H.sapiens 2-222 -48.700 21  sp|O94911|ABCA8_HUMAN ATP-binding cassette sub-family A member 8 OS=Homo sapiens GN=ABCA8 PE=1 SV=3 (Range: 1201-1500)
HGM_OVER 36-202 -4.100 13  PB005684 gi|160884252|ref|ZP_02065255.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]gi|156109991|gb|EDO11736.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]
JCSG0516 1-224 -115.000 47  TM0352 TM0352 282227 Purified-2001-03-14
NEW_HUMAN_DOMAINS 7-51 -7.190 sp|Q6P2S7|GNN_HUMAN Tetratricopeptide repeat protein GNN OS=Homo sapiens GN=GNN PE=2 SV=3 (Range: 217-335)
PDB0516 4-224 -112.000 48  3tif_A mol:protein length:235 Uncharacterized ABC transporter ATP-binding p
PfamA30U 18-215 -18.400 13  PF10443.7; C8VEZ9_EMENI/373-791; RNA12 protein
24-173 -41.000 28  PF00005.25; YTFR_ECOLI/25-174; ABC transporter
SCOP206 2-224 -110.000 46  d2pcja_ c.37.1.0 (A:) automated matches {Aquifex aeolicus [TaxId: 224324]}
VFDB 4-224 -90.700 29  VFG002059(gi:15595271) (tagT) type six secretion associated protein TagT, ATP-binding component of ABC transporter [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
3 gi|15895079|ref|NP_348428.1| ribosome-binding factor A (CA_C1803) [Clostridium acetobutylicum ATCC 824] (Range: 1-121) 121 COG0516 5-121 -64.400 31  [J] COG0858 Ribosome-binding factor A
H.sapiens 1-121 -39.800 17  sp|Q8N0V3|RBFAL_HUMAN Putative ribosome-binding factor A, mitochondrial OS=Homo sapiens GN=C18orf22 PE=1 SV=3
HGM_OVER 39-119 -3.420 16  HGC00509 gi|162658693|dbj|BAAX01000912.1|3.0 TMP00561;
JCSG0516 2-121 -64.300 30  TM0855 TM0855 282725 PDB-2010-06-16
NEW_HUMAN_DOMAINS 2-60 -6.960 16  sp|Q9H2U1|DHX36_HUMAN Probable ATP-dependent RNA helicase DHX36 OS=Homo sapiens GN=DHX36 PE=1 SV=2 (Range: 935-1008)
PDB0516 1-118 -64.500 19  1pa4_A mol:protein length:116 Probable ribosome-binding factor A
PfamA30U 5-109 -61.100 39  PF02033.16; R5QDT1_9FIRM/5-110; Ribosome-binding factor A
SCOP206 2-104 -60.100 33  d2kzfa1 d.52.7.0 (A:2-106) automated matches {Thermotoga maritima [TaxId: 2336]}
VFDB 19-96 -4.770 10  VFG001424(gi:2290538) (draE2) Dr-II structural adhesin precursor [Afa/Dr family (VF0212)] [Escherichia coli EC7372]
4 gi|15896238|ref|NP_349587.1| dimethyladenosine transferase (CA_C2986) [Clostridium acetobutylicum ATCC 824] (Range: 1-276) 276 COG0516 2-276 -91.000 29  [A] KOG0821 Predicted ribosomal RNA adenine dimethylase
H.sapiens 2-276 -91.000 29  sp|Q8WVM0|TFB1M_HUMAN Dimethyladenosine transferase 1, mitochondrial OS=Homo sapiens GN=TFB1M PE=1 SV=1
HGM_OVER 61-249 -3.290 12  PB023890 Q7MUU3_PORGI/1-263 PB023890; Pfam-B_23890;
JCSG0516 2-276 -107.000 38  TM1437 TM1437 283297 Purified-2004-02-02
NEW_HUMAN_DOMAINS 70-188 -6.520 12  sp|Q68CP4|HGNAT_HUMAN Heparan-alpha-glucosaminide N-acetyltransferase OS=Homo sapiens GN=HGSNAT PE=1 SV=2 (Range: 59-193)
PDB0516 2-276 -110.000 34  3grr_A mol:protein length:295 Dimethyladenosine transferase
PfamA30U 14-270 -117.000 48  PF00398.18; RSMA_BACSU/19-283; Ribosomal RNA adenine dimethylase
SCOP206 2-274 -109.000 35  d3futa_ c.66.1.0 (A:) automated matches {Thermus thermophilus HB8 [TaxId: 300852]}
VFDB 31-145 -8.790 15  VFG011677(gi:15792738) (Cj1420c) methyltransferase [Capsule biosynthesis and transport (CVF393)] [Campylobacter jejuni subsp. jejuni NCTC 11168]
5 gi|15894673|ref|NP_348022.1| phosphoribosylglycinamide formyltransferase (CA_C1394) [Clostridium acetobutylicum ATCC 824] (Range: 1-204) 204 COG0516 2-203 -88.300 34  [F] COG0299 Folate-dependent phosphoribosylglycinamide formyltransferase PurN
H.sapiens 1-202 -82.700 40  sp|P22102|PUR2_HUMAN Trifunctional purine biosynthetic protein adenosine-3 OS=Homo sapiens GN=GART PE=1 SV=1 (Range: 751-1010)
HGM_OVER 16-157 -5.160 11  HGC00422 gi|163631722|dbj|BABG01004545.1|2.0 TMP00397;
JCSG0516 2-204 -83.200 40  TM1248 TM1248 283113 Crystal|NMR-2004-02-09
NEW_HUMAN_DOMAINS 83-146 -6.590 21  sp|Q8IWZ3|ANKH1_HUMAN Ankyrin repeat and KH domain-containing protein 1 OS=Homo sapiens GN=ANKHD1 PE=1 SV=1 (Range: 2450-2542)
PDB0516 1-204 -89.300 50  2ywr_A mol:protein length:216 Phosphoribosylglycinamide formyltransferase
PfamA30U 2-185 -89.400 40  PF00551.17; PUR2_DROME/1154-1336; Formyl transferase
SCOP206 2-203 -89.300 35  d3tqra_ c.65.1.0 (A:) automated matches {Coxiella burnetii [TaxId: 777]}
VFDB 2-190 -58.500 21  VFG016016(gi:15597592) (pvdF) pyoverdine synthetase F [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
6 gi|15894664|ref|NP_348013.1| Alpha-ribazole-5'-phosphate phosphatase, CobC (CA_C1385) [Clostridium acetobutylicum ATCC 824] (Range: 1-191) 191 COG0516 1-191 -67.700 18  [G] COG0406 Fructose-2,6-bisphosphatase
H.sapiens 1-191 -75.500 24  sp|Q9NQ88|TIGAR_HUMAN Probable fructose-2,6-bisphosphatase TIGAR OS=Homo sapiens GN=TIGAR PE=1 SV=1
HGM_OVER 29-139 -4.750 16  PB000716 Q60CS7_METCA/1-294 PB000716; Pfam-B_716;
JCSG0516 2-191 -86.000 33  TM1374 TM1374 283235 Purified-2004-01-08
NEW_HUMAN_DOMAINS 49-103 -6.940 12  sp|Q6L9W6|B4GN3_HUMAN N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase 2 OS=Homo sapiens GN=B4GALNT3 PE=1 SV=2 (Range: 327-408)
PDB0516 1-191 -97.600 29  4ij5_A mol:protein length:211 Phosphoserine phosphatase 1
PfamA30U 4-191 -85.300 26  PF00300.20; B1VGF0_CORU7/234-430; Histidine phosphatase superfamily (branch 1)
SCOP206 1-191 -97.600 29  d4ij5a_ c.60.1.0 (A:) automated matches {Hydrogenobacter thermophilus [TaxId: 608538]}
VFDB 6-146 -5.240 17  VFG042976(gi:29375667) (ebpA) endocarditis and biofilm-associated pilus tip protein EbpA [Ebp pili (VF0538)] [Enterococcus faecalis V583]
7 gi|15894369|ref|NP_347718.1| Beta-glucosidase family protein (CA_C1084) [Clostridium acetobutylicum ATCC 824] (Range: 1-474) 474 COG0516 1-470 -140.000 40  [G] COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase
H.sapiens 4-468 -80.700 31  sp|Q9H227|GBA3_HUMAN Cytosolic beta-glucosidase OS=Homo sapiens GN=GBA3 PE=1 SV=2
HGM_OVER 352-472 -4.260 PB006791 A6TXD6_9CLOT/1-181 PB006791; Pfam-B_6791;
JCSG0516 12-466 -10.400 12  SP17078A ZP_02065779.1 408544 Selected-2009-11-12
60-469 -19.100 16  TT16503A YP_001636660.1 403870 Selected-2009-08-14
NEW_HUMAN_DOMAINS 388-454 -6.440 11  sp|A6NFU0|F187A_HUMAN Ig-like V-type domain-containing protein FAM187A OS=Homo sapiens GN=FAM187A PE=3 SV=1 (Range: 142-237)
PDB0516 2-471 -138.000 40  3pn8_A mol:protein length:480 Putative phospho-beta-glucosidase
PfamA30U 2-469 -160.000 61  PF00232.16; BGLC_BACSU/5-475; Glycosyl hydrolase family 1
SCOP206 2-471 -139.000 40  d4ddea1 c.1.8.0 (A:1-477) automated matches {Streptococcus mutans [TaxId: 1309]}
VFDB 70-469 -6.580 13  VFG041350(gi:52843057) (lgt2/legC8) Dot/Icm type IV secretion system effector Lgt2/LegC8, glucosyltransferase [Dot/Icm (SS047)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
8 gi|15896898|ref|NP_350247.1| alpha/beta fold family hydrolase (CA_C3665) [Clostridium acetobutylicum ATCC 824] (Range: 1-265) 265 COG0516 3-264 -66.000 27  [I] KOG4667 Predicted esterase
H.sapiens 1-263 -50.200 17  sp|Q9NUJ1|ABHDA_HUMAN(removed signalp:1-21) Abhydrolase domain-containing protein 10, mitochondrial OS=Homo sapiens GN=ABHD10 PE=1 SV=1
HGM_OVER 62-259 -2.660 11  PB001823 Q5L7Q9_BACFN/1-326 PB001823; Pfam-B_1823;
JCSG0516 1-264 -71.000 21  PU4107A NP_744385.1 381539 Purified-2009-01-30
NEW_HUMAN_DOMAINS 5-77 -8.940 12  tr|F8WBB3|F8WBB3_HUMAN Uncharacterized protein OS=Homo sapiens GN=ABHD1 PE=4 SV=1 (Range: 22-102)
PDB0516 8-264 -80.800 28  2wtm_A mol:protein length:251 EST1E
PfamA30U 7-264 -56.700 16  PF02273.13; C7BN06_PHOAA/8-301; Acyl transferase
SCOP206 6-261 -53.900 16  d1thta_ c.69.1.13 (A:) Myristoyl-ACP-specific thioesterase {Vibrio harveyi [TaxId: 669]}
VFDB 5-260 -33.500 13  VFG000156(gi:15598675) (rhlA) rhamnosyltransferase chain A [Rhamnolipid (VF0089)] [Pseudomonas aeruginosa PAO1]
9 gi|15895531|ref|NP_348880.1| ATP-dependent exonuclease synthesis protein AddB (CA_C2263) [Clostridium acetobutylicum ATCC 824] (Range: 1-500) 500 COG0516 1-500 -127.000 29  [L] COG3857 ATP-dependent nuclease, subunit B
H.sapiens 6-330 -9.250 12  sp|Q8NFZ0|FBX18_HUMAN F-box only protein 18 OS=Homo sapiens GN=FBXO18 PE=1 SV=2 (Range: 451-750)
HGM_OVER 315-385 -2.720 18  HGC00518 gi|162728471|dbj|BAAY01000490.1|2.0 TMP00574;
JCSG0516 5-499 -18.000 16  TM1238 TM1238 283103 Purified-2004-02-02
NEW_HUMAN_DOMAINS 324-406 -5.050 10  sp|Q71RC2|LARP4_HUMAN La-related protein 4 OS=Homo sapiens GN=LARP4 PE=1 SV=3 (Range: 273-354)
PDB0516 1-500 -131.000 29  3u44_B mol:protein length:1166 ATP-dependent helicase/deoxyribonuclease subu
PfamA30U 10-497 -14.400 11  PF04257.12; RECC_ECOLI/1-806; Exodeoxyribonuclease V, gamma subunit
SCOP206 5-499 -16.300 15  g1qhh.1 c.37.1.19 (A:,B:,C:,D:) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}
VFDB 5-490 -6.210 VFG001844(gi:52840701) (icmB/dotO) Dot/Icm type IV secretion system protein IcmB/DotO [Dot/Icm (VF0156)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
10 gi|15895531|ref|NP_348880.1| ATP-dependent exonuclease synthesis protein AddB (CA_C2263) [Clostridium acetobutylicum ATCC 824] (Range: 251-750) 500 COG0516 1-500 -120.000 30  [L] COG3857 ATP-dependent nuclease, subunit B
H.sapiens 199-425 -7.380 10  sp|Q8NFZ0|FBX18_HUMAN F-box only protein 18 OS=Homo sapiens GN=FBXO18 PE=1 SV=2 (Range: 751-1043)
HGM_OVER 275-391 -2.690 13  HGC00962 gi|162759780|dbj|BAAZ01005693.1|3.0 TMP01305;
JCSG0516 1-433 -14.100 15  TM1238 TM1238 283103 Purified-2004-02-02
NEW_HUMAN_DOMAINS 300-432 -4.890 12  sp|P55268|LAMB2_HUMAN Laminin subunit beta-2 OS=Homo sapiens GN=LAMB2 PE=1 SV=2 (Range: 576-746)
PDB0516 1-500 -122.000 30  3u44_B mol:protein length:1166 ATP-dependent helicase/deoxyribonuclease subu
PfamA30U 42-429 -23.200 14  PF04257.12; RECC_ECOLI/1-806; Exodeoxyribonuclease V, gamma subunit
SCOP206 46-429 -25.700 14  d1w36c2 c.37.1.19 (C:348-817) Exodeoxyribonuclease V gamma chain (RecC), N-terminal domain {Escherichia coli [TaxId: 562]}
VFDB 220-422 -4.560 10  VFG013491(gi:16273584) (lsgD) glycosyltransferase [LOS (CVF494)] [Haemophilus influenzae Rd KW20]
11 gi|15895531|ref|NP_348880.1| ATP-dependent exonuclease synthesis protein AddB (CA_C2263) [Clostridium acetobutylicum ATCC 824] (Range: 501-1000) 500 COG0516 1-500 -149.000 32  [L] COG3857 ATP-dependent nuclease, subunit B
H.sapiens 276-495 -9.560 13  sp|Q9BQP7|CT072_HUMAN Uncharacterized protein C20orf72 OS=Homo sapiens GN=C20orf72 PE=1 SV=1
HGM_OVER 133-315 -2.810 HGC00683 gi|163310582|dbj|BABD01000118.1|4.0 TMP00861;
JCSG0516 259-498 -12.300 15  FR14749B NP_816462.1 392602 Crystal|NMR-2009-05-21
NEW_HUMAN_DOMAINS 314-454 -5.750 12  tr|B4DQ88|B4DQ88_HUMAN Uncharacterized protein OS=Homo sapiens GN=EMR2 PE=2 SV=1 (Range: 1-160)
PDB0516 1-500 -150.000 32  3u44_B mol:protein length:1166 ATP-dependent helicase/deoxyribonuclease subu
PfamA30U 233-498 -11.800 16  PF06023.10; Q977B6_SULTO/1-288; Archaeal protein of unknown function (DUF911 topsan)
274-500 -84.300 36  PF12705.5; D6XUK2_BACIE/780-1125; PD-(D/E)XK nuclease superfamily
SCOP206 15-179 -9.310 15  d1w36c2 c.37.1.19 (C:348-817) Exodeoxyribonuclease V gamma chain (RecC), N-terminal domain {Escherichia coli [TaxId: 562]}
VFDB 37-498 -4.860 VFG002383(gi:15611007) (eccCb1) ESX-1 type VII secretion system FtsK/SpoIIIE family protein EccCb1 [ESX-1 (VF0315)] [Mycobacterium tuberculosis H37Rv]
12 gi|15895531|ref|NP_348880.1| ATP-dependent exonuclease synthesis protein AddB (CA_C2263) [Clostridium acetobutylicum ATCC 824] (Range: 751-1153) 403 COG0516 1-396 -119.000 35  [L] COG3857 ATP-dependent nuclease, subunit B
H.sapiens 26-384 -16.500 14  sp|Q9H790|DEM1_HUMAN Defects in morphology protein 1 homolog OS=Homo sapiens GN=DEM1 PE=2 SV=1
HGM_OVER 207-311 -2.920 HGC00024 gi|162813637|dbj|BABA01031072.1|2.0 TMP01508;
JCSG0516 8-363 -12.900 16  TB5245A 13816693 358056 Purified-2004-06-03
NEW_HUMAN_DOMAINS 177-372 -6.020 16  sp|Q9NU53|CF072_HUMAN Uncharacterized protein C6orf72 OS=Homo sapiens GN=C6orf72 PE=2 SV=1 (Range: 24-261)
PDB0516 1-399 -121.000 35  3u44_B mol:protein length:1166 ATP-dependent helicase/deoxyribonuclease subu
PfamA30U 24-364 -118.000 34  PF12705.5; D6XUK2_BACIE/780-1125; PD-(D/E)XK nuclease superfamily
SCOP206 57-292 -8.540 15  d1w36b3 c.52.1.24 (B:899-1174) Exodeoxyribonuclease V beta chain (RecB), C-terminal domain {Escherichia coli [TaxId: 562]}
VFDB 191-352 -4.710 14  VFG045503(gi:52841202) (lpg0967) Dot/Icm type IV secretion system effector [Dot/Icm (VF0156)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
13 gi|15895492|ref|NP_348841.1| chemotaxis protein CheW (CA_C2224) [Clostridium acetobutylicum ATCC 824] (Range: 1-147) 147 COG0516 2-141 -41.900 20  [NT] COG0835 Chemotaxis signal transduction protein
H.sapiens 14-54 -7.830 17  sp|O95411|TIAF1_HUMAN TGFB1-induced anti-apoptotic factor 1 OS=Homo sapiens GN=TIAF1 PE=2 SV=2
HGM_OVER 1-132 -3.240 14  PB039305 _Gut.Meta.Jp.0057508_ gi|162726131|dbj|BAAY01002830.1||2 (- 1092:1581~0 complete)
JCSG0516 1-147 -75.500 39  TM0718 TM0718 282588 Purified-2001-02-28
NEW_HUMAN_DOMAINS 10-144 -4.940 sp|Q6Q759|SPG17_HUMAN Sperm-associated antigen 17 OS=Homo sapiens GN=SPAG17 PE=1 SV=1 (Range: 1642-1794)
PDB0516 2-147 -76.200 32  2ho9_A mol:protein length:167 Chemotaxis protein cheW
PfamA30U 8-143 -16.300 16  PF01584.17; Q8XQ78_RALSO/559-691; CheW-like domain
SCOP206 2-147 -76.200 32  d2ho9a_ b.40.7.0 (A:) automated matches {Escherichia coli [TaxId: 562]}
VFDB 2-147 -76.000 32  VFG043210(gi:123442802) (cheW) purine-binding chemotaxis protein CheW [peritrichous flagella (AI145)] [Yersinia enterocolitica subsp. enterocolitica 8081]
14 gi|15894672|ref|NP_348021.1| phosphoribosylaminoimidazole synthetase (CA_C1393) [Clostridium acetobutylicum ATCC 824] (Range: 1-332) 332 COG0516 2-328 -120.000 52  [F] COG0150 Phosphoribosylaminoimidazole (AIR) synthetase
H.sapiens 18-306 -108.000 48  sp|P22102|PUR2_HUMAN Trifunctional purine biosynthetic protein adenosine-3 OS=Homo sapiens GN=GART PE=1 SV=1 (Range: 451-750)
HGM_OVER 96-243 -2.750 10  PB007147 Q11UU2_CYTH3/1-245 PB007147; Pfam-B_7147;
JCSG0516 2-327 -99.600 34  TM1251 TM1251 283116 Purified-2004-01-21
NEW_HUMAN_DOMAINS 71-153 -5.340 18  sp|Q9UHV7|MED13_HUMAN Mediator of RNA polymerase II transcription subunit 13 OS=Homo sapiens GN=MED13 PE=1 SV=3 (Range: 1068-1151)
PDB0516 2-331 -122.000 49  1cli_A mol:protein length:345 PROTEIN (PHOSPHORIBOSYL-AMINOIMIDAZOLE SYNTHE
PfamA30U 62-141 -9.500 21  PF00586.22; E6WZK0_NITSE/47-154; AIR synthase related protein, N-terminal domain
173-328 -65.800 44  PF02769.20; PUR5_NEIMB/175-337; AIR synthase related protein, C-terminal domain
SCOP206 2-165 -84.900 46  d3m84a1 d.79.4.1 (A:1-170) Aminoimidazole ribonucleotide synthetase (PurM) N-terminal domain {Francisella tularensis [TaxId: 177416]}
166-331 -69.600 45  d1clia2 d.139.1.1 (A:171-345) Aminoimidazole ribonucleotide synthetase (PurM) C-terminal domain {Escherichia coli [TaxId: 562]}
VFDB 54-299 -5.160 12  VFG002557(gi:53720407) (wcbJ) capsular polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
15 gi|15893880|ref|NP_347229.1| riboflavin synthase subunit alpha (CA_C0591) [Clostridium acetobutylicum ATCC 824] (Range: 1-213) 213 COG0516 1-201 -97.500 35  [H] KOG3310 Riboflavin synthase alpha chain
H.sapiens 18-201 -7.580 10  sp|Q5JXA9|SIRB2_HUMAN(removed signalp:1-32) Signal-regulatory protein beta-2 OS=Homo sapiens GN=SIRPB2 PE=2 SV=1
HGM_OVER 33-174 -3.000 12  PB048631 gi|160885545|ref|ZP_02066548.1| hypothetical protein BACOVA_03545 [Bacteroides ovatus ATCC 8483]gi|156109167|gb|EDO10912.1| hypothetical protein BACOVA_03545 [Bacteroides ovatus ATCC 8483]
JCSG0516 1-199 -89.800 36  TM1827 TM1827 283680 Purified-2001-10-09
NEW_HUMAN_DOMAINS 6-158 -6.200 13  sp|Q9UH90|FBX40_HUMAN F-box only protein 40 OS=Homo sapiens GN=FBXO40 PE=1 SV=2 (Range: 382-551)
PDB0516 1-201 -97.500 35  1kzl_A mol:protein length:208 Riboflavin Synthase
PfamA30U 97-181 -39.200 48  PF00677.15; B3EB72_GEOLS/99-183; Lumazine binding domain
SCOP206 1-88 -39.900 39  d1kzla1 b.43.4.3 (A:1-92) Riboflavin synthase {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
90-198 -52.600 33  d1kzla2 b.43.4.3 (A:93-202) Riboflavin synthase {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
VFDB 6-185 -6.460 13  VFG036938(gi:15676235) (farA) fatty acid efflux system protein FarA [FarAB (VF0450)] [Neisseria meningitidis MC58]
16 gi|15893578|ref|NP_346927.1| hypothetical protein (CA_C0286) [Clostridium acetobutylicum ATCC 824] (Range: 1-244) 244 COG0516 1-244 -90.400 18  [S] COG4200 Uncharacterized protein conserved in bacteria
H.sapiens 1-196 -13.900 13  sp|Q9H221|ABCG8_HUMAN ATP-binding cassette sub-family G member 8 OS=Homo sapiens GN=ABCG8 PE=1 SV=1 (Range: 301-600)
1-244 -12.500 10  sp|Q8WXS5|CCG8_HUMAN Voltage-dependent calcium channel gamma-8 subunit OS=Homo sapiens GN=CACNG8 PE=2 SV=3
HGM_OVER 79-167 -6.210 PB006205 Q3F123_BACTI/1-181 PB006205; Pfam-B_6205;
JCSG0516 2-244 -30.300 15  TM1029 TM1029 282896 Purified-2001-12-12
NEW_HUMAN_DOMAINS 78-97 -4.740 10  sp|Q4KMG0|CDON_HUMAN Cell adhesion molecule-related/down-regulated by oncogenes OS=Homo sapiens GN=CDON PE=1 SV=2 (Range: 1209-1287)
PDB0516 10-185 -7.860 3jbr_E mol:protein length:222 Voltage-dependent calcium channel gamma-1 sub
PfamA30U 4-178 -61.500 11  PF12730.5; R6N7Z5_9FIRM/4-186; ABC-2 family transporter protein
4-243 -22.700 10  PF12679.5; E4NSW3_HALBP/4-306; ABC-2 family transporter protein
SCOP206 87-198 -5.450 d3rlff1 e.70.1.1 (F:10-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
VFDB 2-241 -16.900 11  VFG045333(gi:588561366) (llsH) ABC transporter permease protein LlsH [LLS (VF0410)] [Listeria innocua SLCC6294]
17 gi|15896862|ref|NP_350211.1| oligopeptide ABC transporter, ATPase component (CA_C3628) [Clostridium acetobutylicum ATCC 824] (Range: 1-322) 322 COG0516 7-322 -140.000 52  [E] COG4608 ABC-type oligopeptide transport system, ATPase component
H.sapiens 10-283 -31.300 21  sp|Q8WWZ4|ABCAA_HUMAN ATP-binding cassette sub-family A member 10 OS=Homo sapiens GN=ABCA10 PE=1 SV=3 (Range: 1201-1500)
11-254 -39.500 28  sp|Q9NRK6|ABCBA_HUMAN ATP-binding cassette sub-family B member 10, mitochondrial OS=Homo sapiens GN=ABCB10 PE=1 SV=2 (Range: 451-738)
HGM_OVER 155-270 -3.490 15  PB053359 gi|153891307|ref|ZP_02012332.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]gi|151582630|gb|EDN46158.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]
JCSG0516 2-322 -140.000 54  TM1750 TM1750 283605 Purified-2004-07-19
NEW_HUMAN_DOMAINS 123-284 -5.450 tr|A6NMH3|A6NMH3_HUMAN Uncharacterized protein OS=Homo sapiens GN=TNNI3K PE=4 SV=1 (Range: 25-169)
PDB0516 8-322 -101.000 32  4fwi_B mol:protein length:334 ABC-type dipeptide/oligopeptide/nickel transp
PfamA30U 31-183 -28.000 26  PF00005.25; YTFR_ECOLI/25-174; ABC transporter
36-287 -11.000 12  PF10443.7; C8VEZ9_EMENI/373-791; RNA12 protein
234-301 -32.700 38  PF08352.10; Q8TTX6_METAC/231-290; Oligopeptide/dipeptide transporter, C-terminal region
SCOP206 10-254 -65.100 33  d3tuic1 c.37.1.12 (C:1-240) automated matches {Escherichia coli K-12 [TaxId: 83333]}
VFDB 8-287 -54.400 31  VFG001206(gi:15677997) (fbpC) iron(III) ABC transporter, ATP-binding protein [FbpABC (VF0272)] [Neisseria meningitidis MC58]
18 gi|15895331|ref|NP_348680.1| segregation and condensation protein A (CA_C2061) [Clostridium acetobutylicum ATCC 824] (Range: 1-249) 249 COG0516 2-249 -87.200 29  [S] COG1354 Uncharacterized conserved protein
H.sapiens 175-247 -12.600 13  sp|O60216|RAD21_HUMAN Double-strand-break repair protein rad21 homolog OS=Homo sapiens GN=RAD21 PE=1 SV=2 (Range: 451-631)
HGM_OVER 38-228 -6.510 PB013946 A7ABR4_9PORP/121-442 PB013946; Pfam-B_13946;
JCSG0516 1-249 -95.100 35  PL5098B YP_384913.1 401502 Purified-2009-07-17
NEW_HUMAN_DOMAINS 8-80 -5.520 14  tr|Q0PRL4|Q0PRL4_HUMAN Forkhead box P2 variant 3 OS=Homo sapiens GN=FOXP2 PE=2 SV=1 (Range: 252-330)
PDB0516 1-163 -77.000 41  3w6j_A mol:protein length:174 ScpA
163-243 -17.800 19  4i99_C mol:protein length:87 Putative uncharacterized protein
PfamA30U 20-243 -52.100 15  PF02616.12; P74212_SYNY3/16-259; Segregation and condensation protein ScpA
SCOP206 208-243 -7.620 27  d1w1we_ a.4.5.57 (E:) Sister chromatid cohesion protein 1 (SCC1), C-terminal domain {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
VFDB 47-103 -5.490 15  VFG036902(gi:15676453) (pilV) type IV pilus minor pilin PilV [Type IV pili (CVF189)] [Neisseria meningitidis MC58]
19 gi|15894096|ref|NP_347445.1| hydrogenase formation factor (hypE) (CA_C0809) [Clostridium acetobutylicum ATCC 824] (Range: 1-335) 335 COG0516 2-335 -111.000 51  [O] COG0309 Hydrogenase maturation factor
H.sapiens 26-315 -20.000 17  sp|Q99611|SPS2_HUMAN Selenide, water dikinase 2 OS=Homo sapiens GN=SEPHS2 PE=1 SV=3
HGM_OVER 30-105 -2.720 13  PB006154 _JGI.0331794_ 2004021056 [Human Gut Community Subject 7]
JCSG0516 3-335 -101.000 44  FL10857A NP_281809.1 375685 Crystal|NMR-2007-06-16
NEW_HUMAN_DOMAINS 51-98 -5.090 30  sp|Q9NXD2|MTMRA_HUMAN Myotubularin-related protein 10 OS=Homo sapiens GN=MTMR10 PE=1 SV=3 (Range: 709-777)
PDB0516 2-335 -114.000 46  2z1t_A mol:protein length:343 Hydrogenase expression/formation protein HypE
PfamA30U 37-128 -10.100 21  PF00586.22; E6WZK0_NITSE/47-154; AIR synthase related protein, N-terminal domain
82-307 -9.650 11  PF12818.5; VG75_EHV2/265-542; dsDNA viral tegument protein
SCOP206 5-128 -12.300 13  d2yyda1 d.79.4.1 (A:3-154) Selenide, water dikinase SelD {Aquifex aeolicus [TaxId: 63363]}
38-151 -62.800 50  d2z1ea1 d.79.4.1 (A:43-155) Hydrogenase expression/formation protein HypE {Thermococcus kodakaraensis [TaxId: 311400]}
155-331 -75.100 41  d2z1ea2 d.139.1.1 (A:156-334) Hydrogenase expression/formation protein HypE {Thermococcus kodakaraensis [TaxId: 311400]}
VFDB 73-334 -5.490 VFG002313(gi:123443692) (pilQ) type IV pilus biogenesis protein PilQ [Type IV pili (VF0401)] [Yersinia enterocolitica subsp. enterocolitica 8081]
20 gi|15895945|ref|NP_349294.1| DNA helicase (CA_C2687) [Clostridium acetobutylicum ATCC 824] (Range: 1-714) 714 COG0516 1-593 -157.000 39  [L] COG0514 Superfamily II DNA helicase
1-714 -31.800 16  [R] COG1201 Lhr-like helicases
H.sapiens 3-269 -80.700 40  sp|O94762|RECQ5_HUMAN ATP-dependent DNA helicase Q5 OS=Homo sapiens GN=RECQL5 PE=1 SV=2 (Range: 1-300)
69-365 -93.500 37  sp|Q14191|WRN_HUMAN Werner syndrome ATP-dependent helicase OS=Homo sapiens GN=WRN PE=1 SV=1 (Range: 601-900)
132-414 -89.200 33  sp|O94762|RECQ5_HUMAN ATP-dependent DNA helicase Q5 OS=Homo sapiens GN=RECQL5 PE=1 SV=2 (Range: 151-450)
217-495 -80.200 32  sp|Q14191|WRN_HUMAN Werner syndrome ATP-dependent helicase OS=Homo sapiens GN=WRN PE=1 SV=1 (Range: 751-1050)
266-562 -62.000 16  sp|O94761|RECQ4_HUMAN ATP-dependent DNA helicase Q4 OS=Homo sapiens GN=RECQL4 PE=1 SV=1 (Range: 751-1050)
421-702 -46.200 18  sp|Q14191|WRN_HUMAN Werner syndrome ATP-dependent helicase OS=Homo sapiens GN=WRN PE=1 SV=1 (Range: 1051-1350)
HGM_OVER 38-152 -4.040 17  PB053359 gi|153891307|ref|ZP_02012332.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]gi|151582630|gb|EDN46158.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]
JCSG0516 1-424 -30.600 17  WS.A20813A.DDX21 BC008071 423980 PDB-2013-01-16
2-677 -19.500 13  TM0173 TM0173 282053 Cloned-2002-06-25
6-344 -32.100 22  WT20667B.DDX6 BC065007 422785 Crystal|NMR-2011-11-15
9-471 -22.500 17  WS.A20811A.DDX1 BC053673 423964 Selected-2011-10-12
NEW_HUMAN_DOMAINS 26-561 -4.370 11  sp|O60477|DBC1_HUMAN Deleted in bladder cancer protein 1 OS=Homo sapiens GN=DBC1 PE=2 SV=2 (Range: 179-761)
PDB0516 1-663 -27.000 13  5a9j_A mol:protein length:896 DNA POLYMERASE THETA
3-516 -138.000 39  4tmu_A mol:protein length:541 RecQ
3-605 -134.000 33  4cdg_A mol:protein length:673 BLOOM SYNDROME PROTEIN
591-713 -25.800 16  3iuo_A mol:protein length:122 ATP-dependent DNA helicase RecQ
PfamA30U 19-185 -68.100 40  PF00270.27; SGS1_YEAST/680-854; DEAD/DEAH box helicase
22-348 -13.600 14  PF06862.10; UTP25_SCHPO/187-651; Utp25, U3 small nucleolar RNA-associated SSU processome protein 25
22-688 -12.500 10  PF02399.13; OBP_VZVD/13-828; Origin of replication binding protein
215-324 -27.600 27  PF00271.29; Q9ZCQ0_RICPR/221-329; Helicase conserved C-terminal domain
335-399 -26.100 30  PF16124.3; R7J4M7_9BACT/340-402; RecQ zinc-binding
401-509 -35.200 28  PF09382.8; Q5F644_NEIG1/401-509; RQC domain
518-585 -33.000 38  PF00570.21; Q8G567_BIFLO/575-642; HRDC domain
616-704 -23.500 34  PF14493.4; C0QFE1_DESAH/739-826; Helix-turn-helix domain
SCOP206 1-199 -81.800 46  d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]}
200-401 -79.400 38  d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]}
402-509 -34.900 24  d1oywa1 a.4.5.43 (A:407-516) DNA helicase RecQ DNA-binding domain {Escherichia coli [TaxId: 562]}
516-592 -36.500 37  d1wuda1 a.60.8.1 (A:530-606) HRDC domain from RecQ helicase {Escherichia coli [TaxId: 562]}
VFDB 10-567 -7.810 11  VFG001980(gi:121582664) (virD4) Type IV secretion system protein VirD4 [Type IV secretion system (VF0325)] [Campylobacter jejuni subsp. jejuni 81-176]


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ma H, Xiong H, Liu T, Zhang L, Godzik A., Zhang Z. Aggregate formation and synaptic abnormality induced by DSCR1. J Neurochem. 2004 Mar;88(6):1485-96.