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# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|60680547|ref|YP_210691.1| hypothetical protein (BF1003) [Bacteroides fragilis NCTC 9343] (Range: 1-117) 117 HGM_OVER 12-117 -13.600 14  PB000821 Q82P27_STRAW/1-209 PB000821; Pfam-B_821;
2 gi|60680256|ref|YP_210400.1| hypothetical protein (BF0697) [Bacteroides fragilis NCTC 9343] (Range: 1-74) 74 HGM_OVER 47-72 -3.950 30  PB019279 Q5LE73_BACFN/1-147 PB019279; Pfam-B_19279;
3 gi|60681449|ref|YP_211593.1| MatE family transmembrane protein (BF1960) [Bacteroides fragilis NCTC 9343] (Range: 1-447) 447 HGM_OVER 12-216 -3.840 12  PB032242 Q8FLW6_COREF/1-257 PB032242; Pfam-B_32242;
4 gi|60683425|ref|YP_213569.1| 30S ribosomal protein S14 (BF3990) [Bacteroides fragilis NCTC 9343] (Range: 1-99) 99 HGM_OVER 1-99 -4.810 PB002770 Q744K2_MYCPA/1-559 PB002770; Pfam-B_2770;
5 gi|60682385|ref|YP_212529.1| putative CTP pyrophosphohydrolase (BF2916) [Bacteroides fragilis NCTC 9343] (Range: 1-130) 130 HGM_OVER 31-118 -5.130 HGC00522 gi|163636101|dbj|BABG01000172.1|3.0 TMP00580;
6 gi|60680762|ref|YP_210906.1| putative transmembrane conjugate transposon protein (BF1242) [Bacteroides fragilis NCTC 9343] (Range: 1-110) 110 HGM_OVER 1-106 -70.800 59  PB010473 Q8A4J5_BACTN/121-234 PB010473; Pfam-B_10473;
7 gi|60683330|ref|YP_213474.1| ATP-dependent protease ATP-binding subunit ClpX (BF3893) [Bacteroides fragilis NCTC 9343] (Range: 1-415) 415 HGM_OVER 68-358 -4.050 10  PB005684 gi|160884252|ref|ZP_02065255.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]gi|156109991|gb|EDO11736.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]
8 gi|60682477|ref|YP_212621.1|(removed signalp:1-23) hypothetical protein (BF3007) [Bacteroides fragilis NCTC 9343] (Range: 24-588) 565 HGM_OVER 346-565 -6.910 PB062763 Q9F6U5_BACTN/1-245 PB062763; Pfam-B_62763;
9 gi|60681243|ref|YP_211387.1| hypothetical protein (BF1751) [Bacteroides fragilis NCTC 9343] (Range: 1-157) 157 HGM_OVER 1-51 -3.930 PB047496 gi|150008556|ref|YP_001303299.1| hypothetical protein BDI_1942 [Parabacteroides distasonis ATCC 8503]gi|149936980|gb|ABR43677.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503]
10 gi|60682315|ref|YP_212459.1| hypothetical protein (BF2845) [Bacteroides fragilis NCTC 9343] (Range: 1-207) 207 HGM_OVER 31-202 -3.870 13  PB002104 Q72PH8_LEPIC/1-220 PB002104; Pfam-B_2104;
11 gi|60680924|ref|YP_211068.1| putative anti-sigma factor (BF1413) [Bacteroides fragilis NCTC 9343] (Range: 1-311) 311 HGM_OVER 109-208 -4.670 10  PB144506 _Gut.Meta.Jp.0101058_ gi|162866171|dbj|BABB01003836.1||1 (- 121:946~0 complete)
12 gi|60683563|ref|YP_213707.1| putative SufE Fe/S-cluster-related protein (BF4142) [Bacteroides fragilis NCTC 9343] (Range: 1-142) 142 HGM_OVER 38-90 -3.350 PB012823 Q5LCS8_BACFN/1-272 PB012823; Pfam-B_12823;
13 gi|60682225|ref|YP_212369.1| putative two component system response regulator (BF2753) [Bacteroides fragilis NCTC 9343] (Range: 1-225) 225 HGM_OVER 7-207 -4.410 PB064361 Q64PJ4_BACFR/1-580 PB064361; Pfam-B_64361;
14 gi|60682801|ref|YP_212945.1| nicotinate phosphoribosyltransferase (BF3334) [Bacteroides fragilis NCTC 9343] (Range: 1-388) 388 HGM_OVER 182-323 -3.140 HGC00991 gi|163600283|dbj|BABF01000984.1|3.0 TMP01348;
15 gi|60680875|ref|YP_211019.1| hypothetical protein (BF1359) [Bacteroides fragilis NCTC 9343] (Range: 1-245) 245 HGM_OVER 1-135 -11.600 10  PB023339 Q8A4U7_BACTN/1-171 PB023339; Pfam-B_23339;
16 gi|60682029|ref|YP_212173.1| putative bifunctional CbiF/CbiG cobalamin biosynthesis protein (BF2549) [Bacteroides fragilis NCTC 9343] (Range: 1-599) 599 HGM_OVER 243-385 -2.340 PB018258 Q7MT99_PORGI/1-157 PB018258; Pfam-B_18258;
17 gi|60681247|ref|YP_211391.1| hypothetical protein (BF1755) [Bacteroides fragilis NCTC 9343] (Range: 1-299) 299 HGM_OVER 83-295 -4.300 PB045813 Q5LF03_BACFN/1-275 PB045813; Pfam-B_45813;
18 gi|60681605|ref|YP_211749.1| hypothetical protein (BF2124) [Bacteroides fragilis NCTC 9343] (Range: 1-361) 361 HGM_OVER 60-343 -6.340 11  PB002589 gi|91201099|emb|CAJ74158.1| hypothetical protein [Candidatus Kuenenia stuttgartiensis]
19 gi|60681337|ref|YP_211481.1| hypothetical protein (BF1846) [Bacteroides fragilis NCTC 9343] (Range: 1-71) 71 HGM_OVER 2-36 -3.860 17  HGC00857 gi|162620543|dbj|BAAW01002606.1|2.0 TMP01139;
20 gi|60680681|ref|YP_210825.1| hypothetical protein (BF1156) [Bacteroides fragilis NCTC 9343] (Range: 1-221) 221 HGM_OVER 135-221 -5.170 13  PB002534 Q8H9W1_9CAUD/1-397 PB002534; Pfam-B_2534;


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Friedberg I, Jaroszewski L, Ye Y, Godzik A. The interplay of fold recognition and experimental structure determination in structural genomics. Curr Opin Struct Biol. 2004 Jun;14(3):307-12.