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# Query Length Result vs. Range Score %id Covered by template(s)
1 CAJ09955.1 ATP/GTP-binding site motif A (P-loop):Bacterial chromosomal replication initiator protein, DnaA:AAA ATPase:Neutral zinc metal [Brucella abortus 2308] 496 SCOP206 150-371 -85.400 33  d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}
387-494 -48.600 33  d1l8qa1 a.4.12.2 (A:290-399) Chromosomal replication initiation factor DnaA C-terminal domain IV {Aquifex aeolicus [TaxId: 63363]}
2 CAJ09958.1 DNA polymerase III, beta chain:Inorganic pyrophosphatase [Brucella abortus 2308] 397 SCOP206 26-147 -53.800 43  d4k3la1 d.131.1.1 (A:1-122) DNA polymerase III, beta subunit {Escherichia coli [TaxId: 562]}
149-275 -59.400 41  d4k3la2 d.131.1.1 (A:123-244) DNA polymerase III, beta subunit {Escherichia coli [TaxId: 562]}
276-396 -59.200 33  d4k3la3 d.131.1.1 (A:245-365) DNA polymerase III, beta subunit {Escherichia coli [TaxId: 562]}
3 CAJ09959.1 RecF protein:ATP/GTP-binding site motif A (P-loop):Aldehyde dehydrogenase:SMC protein, N-terminal:AAA ATPase [Brucella abortus 2308] 384 SCOP206 14-384 -33.800 21  g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Pyrococcus furiosus [TaxId: 2261]}
4 CAJ09960.1 NAD binding site:UBA/THIF-type NAD/FAD binding fold:Aromatic-ring hydroxylase [Brucella abortus 2308] 260 SCOP206 10-257 -109.000 44  d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}
5 CAJ09961.1 Pyridine nucleotide-disulphide oxidoreductase, class I:D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain [Brucella abortus 2308] 318 SCOP206 42-160 -16.900 25  d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase {Pyrobaculum aerophilum [TaxId: 13773]}
96-284 -52.300 24  d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Pyrobaculum aerophilum [TaxId: 13773]}
6 CAJ09962.1 ATP/GTP-binding site motif A (P-loop):ABC transporter:AAA ATPase [Brucella abortus 2308] 541 SCOP206 3-237 -46.000 31  d2pcja_ c.37.1.0 (A:) automated matches {Aquifex aeolicus [TaxId: 224324]}
275-525 -58.300 28  d3tuic1 c.37.1.12 (C:1-240) automated matches {Escherichia coli K-12 [TaxId: 83333]}
7 CAJ09963.1 Binding-protein-dependent transport systems inner membrane component [Brucella abortus 2308] 379 SCOP206 165-373 -17.500 17  d3tuia_ f.58.1.1 (A:) automated matches {Escherichia coli K-12 [TaxId: 83333]}
8 CAJ09964.1 Binding-protein-dependent transport systems inner membrane component [Brucella abortus 2308] 365 SCOP206 121-355 -11.900 17  d3tuia_ f.58.1.1 (A:) automated matches {Escherichia coli K-12 [TaxId: 83333]}
9 CAJ09965.1 Bacterial extracellular solute-binding protein, family 5 [Brucella abortus 2308] 604 SCOP206 51-603 -44.600 18  d1xoca1 c.94.1.1 (A:17-520) Oligo-peptide binding protein (OPPA) {Bacillus subtilis [TaxId: 1423]}
75-593 -50.100 18  d1vr5a1 c.94.1.1 (A:23-557) Oligo-peptide binding protein (OPPA) {Thermotoga maritima [TaxId: 2336]}
10 CAJ09966.1 Bacterial extracellular solute-binding protein, family 5 [Brucella abortus 2308] 622 SCOP206 58-622 -52.400 18  d1vr5a1 c.94.1.1 (A:23-557) Oligo-peptide binding protein (OPPA) {Thermotoga maritima [TaxId: 2336]}
11 CAJ09967.1 conserved hypothetical protein [Brucella abortus 2308] 107 SCOP206 11-101 -7.370 19  d4g8ta1 d.54.1.0 (A:2-133) automated matches {Actinobacillus succinogenes [TaxId: 339671]}
12 CAJ09968.1 conserved hypothetical protein [Brucella abortus 2308] 66 SCOP206 10-66 -5.640 19  d4mu3a2 d.14.1.9 (A:96-194) automated matches {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
13 CAJ09969.1 conserved hypothetical protein [Brucella abortus 2308] 116 SCOP206 6-96 -6.380 14  d1w9sa_ b.18.1.10 (A:) Hypothetical protein BH0236 {Bacillus halodurans [TaxId: 86665]}
14 CAJ09971.1 conserved domain protein [Brucella abortus 2308] 66 SCOP206 7-59 -6.880 15  d2pwwa1 d.129.11.1 (A:2-114) Uncharacterized protein ABC2387 {Bacillus clausii [TaxId: 79880]}
15 CAJ09972.1 Enoyl-CoA hydratase/isomerase [Brucella abortus 2308] 264 SCOP206 6-261 -104.000 33  d3i47a1 c.14.1.0 (A:4-260) automated matches {Legionella pneumophila [TaxId: 272624]}
16 CAJ09973.1 HMG-CoA lyase-like [Brucella abortus 2308] 287 SCOP206 2-280 -33.000 18  d4lrsa1 c.1.10.0 (A:10-294) automated matches {Thermomonospora curvata [TaxId: 471852]}
17 CAJ09974.1 Biotin/lipoyl attachment:Biotin-requiring enzyme, attachment site:Carbamoyl-phosphate synthase L chain, ATP-binding:Carbamoyl [Brucella abortus 2308] 673 SCOP206 19-132 -55.100 61  d2w70a1 c.30.1.1 (A:1-114) Biotin carboxylase (BC), N-terminal domain {Escherichia coli [TaxId: 562]}
133-353 -74.300 53  d2w70a2 d.142.1.2 (A:115-330) Biotin carboxylase (BC), domain 2 {Escherichia coli [TaxId: 562]}
354-464 -35.400 25  d1w96a1 b.84.2.1 (A:451-566) Acetyl-CoA carboxylase, BC-C subdomain {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
593-668 -28.100 38  d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}
18 CAJ09975.1 Carboxyl transferase family [Brucella abortus 2308] 535 SCOP206 1-267 -78.700 22  d3gf3a1 c.14.1.4 (A:3-291) Glutaconyl-CoA decarboxylase A subunit {Clostridium symbiosum [TaxId: 1512]}
270-535 -90.400 27  d3gf3a2 c.14.1.4 (A:292-587) Glutaconyl-CoA decarboxylase A subunit {Clostridium symbiosum [TaxId: 1512]}
19 CAJ09978.1 unnamed protein product [Brucella abortus 2308] 127 SCOP206 12-35 -10.800 16  d2gmga1 a.4.5.82 (A:10-105) Hypothetical protein PF0610 {Pyrococcus furiosus [TaxId: 2261]}
20 CAJ09979.1 ATP/GTP-binding site motif A (P-loop):EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase):3-phosphoshikimate 1-carbo [Brucella abortus 2308] 450 SCOP206 6-447 -146.000 81  d2pqca_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase {Agrobacterium sp. [TaxId: 268951]}


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Alonso A, Sasin J, Bottini N, Friedberg I, Friedberg I, Osterman A, Godzik A., Hunter T, Dixon J, Mustelin T. Protein tyrosine phosphatases in the human genome. Cell. 2004 Jun 11;117(6):699-711. Review.