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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 3034next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 CAJ09955.1 ATP/GTP-binding site motif A (P-loop):Bacterial chromosomal replication initiator protein, DnaA:AAA ATPase:Neutral zinc metal [Brucella abortus 2308] 496 PfamA30U 9-72 -17.300 20  PF11638.6; DNAA_LAWIP/5-67; DnaA N-terminal domain
152-376 -91.300 42  PF00308.16; DNAA_STRCO/317-535; Bacterial dnaA protein
402-470 -39.200 62  PF08299.9; D9QS97_ACEAZ/358-426; Bacterial dnaA protein helix-turn-helix
2 CAJ09958.1 DNA polymerase III, beta chain:Inorganic pyrophosphatase [Brucella abortus 2308] 397 PfamA30U 26-146 -60.000 53  PF00712.17; DPO3B_CAUCR/1-121; DNA polymerase III beta subunit, N-terminal domain
155-274 -59.100 44  PF02767.14; DPO3B_PSEPK/129-244; DNA polymerase III beta subunit, central domain
276-396 -41.000 28  PF02768.13; DPO3B_BACSU/253-376; DNA polymerase III beta subunit, C-terminal domain
3 CAJ09959.1 RecF protein:ATP/GTP-binding site motif A (P-loop):Aldehyde dehydrogenase:SMC protein, N-terminal:AAA ATPase [Brucella abortus 2308] 384 PfamA30U 14-364 -30.700 14  PF13175.4; I1YS32_PREI7/1-378; AAA ATPase domain
4 CAJ09960.1 NAD binding site:UBA/THIF-type NAD/FAD binding fold:Aromatic-ring hydroxylase [Brucella abortus 2308] 260 PfamA30U 34-204 -38.600 25  PF00899.19; SAE2_HUMAN/11-443; ThiF family
5 CAJ09961.1 Pyridine nucleotide-disulphide oxidoreductase, class I:D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain [Brucella abortus 2308] 318 PfamA30U 51-313 -44.300 23  PF00389.28; Q9KCG9_BACHD/20-325; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
107-283 -44.700 27  PF02826.17; Q98GE4_RHILO/107-283; D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
6 CAJ09962.1 ATP/GTP-binding site motif A (P-loop):ABC transporter:AAA ATPase [Brucella abortus 2308] 541 PfamA30U 30-475 -11.800 PF10443.7; C8VEZ9_EMENI/373-791; RNA12 protein
236-280 -14.700 24  PF08352.10; Q8TTX6_METAC/231-290; Oligopeptide/dipeptide transporter, C-terminal region
302-454 -29.100 29  PF00005.25; YTFR_ECOLI/25-174; ABC transporter
310-489 -13.200 16  PF13401.4; B2UJB3_RALPJ/42-210; AAA domain
7 CAJ09963.1 Binding-protein-dependent transport systems inner membrane component [Brucella abortus 2308] 379 PfamA30U 20-72 -14.600 18  PF12911.5; F2G428_ALTMD/14-66; N-terminal TM domain of oligopeptide transport permease C
191-363 -12.000 20  PF00528.20; YHDY_ECOLI/173-362; Binding-protein-dependent transport system inner membrane component
8 CAJ09964.1 Binding-protein-dependent transport systems inner membrane component [Brucella abortus 2308] 365 PfamA30U 150-359 -7.580 16  PF00528.20; YHDY_ECOLI/173-362; Binding-protein-dependent transport system inner membrane component
9 CAJ09965.1 Bacterial extracellular solute-binding protein, family 5 [Brucella abortus 2308] 604 PfamA30U 112-519 -33.600 19  PF00496.20; Q882P9_PSESM/71-433; Bacterial extracellular solute-binding proteins, family 5 Middle
10 CAJ09966.1 Bacterial extracellular solute-binding protein, family 5 [Brucella abortus 2308] 622 PfamA30U 113-526 -34.600 17  PF00496.20; Q882P9_PSESM/71-433; Bacterial extracellular solute-binding proteins, family 5 Middle
114-567 -9.660 11  PF17374; Q8EV07.1/37-965; Family of unknown function (DUF5396 topsan)
11 CAJ09967.1 conserved hypothetical protein [Brucella abortus 2308] 107 PfamA30U 13-73 -6.370 26  PF02082.18; Q817Y2_BACCR/1-83; Transcriptional regulator
12 CAJ09968.1 conserved hypothetical protein [Brucella abortus 2308] 66 PfamA30U 2-36 -5.970 22  PF12550.6; J6ED67_SACK1/277-355; Transcriptional activator of glycolytic enzymes
13 CAJ09969.1 conserved hypothetical protein [Brucella abortus 2308] 116 PfamA30U 5-106 -6.700 13  PF07267.9; Q2NNY4_NPVHC/1-628; Nucleopolyhedrovirus capsid protein P87
14 CAJ09971.1 conserved domain protein [Brucella abortus 2308] 66 PfamA30U 7-59 -6.780 19  PF08868.8; B7GEU3_ANOFW/15-144; YugN-like family
15 CAJ09972.1 Enoyl-CoA hydratase/isomerase [Brucella abortus 2308] 264 PfamA30U 13-255 -65.900 17  PF00378.18; PKSI_BACSU/10-249; Enoyl-CoA hydratase/isomerase
16 CAJ09973.1 HMG-CoA lyase-like [Brucella abortus 2308] 287 PfamA30U 4-278 -28.100 21  PF00682.17; LEU1_ECOLI/4-273; HMGL-like
17 CAJ09974.1 Biotin/lipoyl attachment:Biotin-requiring enzyme, attachment site:Carbamoyl-phosphate synthase L chain, ATP-binding:Carbamoyl [Brucella abortus 2308] 673 PfamA30U 19-128 -53.800 64  PF00289.20; Q5P6X6_AROAE/1-110; Biotin carboxylase, N-terminal domain
133-345 -23.000 19  PF02786.15; CARB_YEAST/149-353; Carbamoyl-phosphate synthase L chain, ATP binding domain
359-464 -41.700 35  PF02785.17; Q0CM38_ASPTN/307-414; Biotin carboxylase C-terminal domain
603-668 -14.200 25  PF00364.20; BCCP_SOYBN/186-260; Biotin-requiring enzyme
18 CAJ09975.1 Carboxyl transferase family [Brucella abortus 2308] 535 PfamA30U 47-533 -176.000 62  PF01039.20; MCCB_ARATH/93-585; Carboxyl transferase domain
19 CAJ09978.1 unnamed protein product [Brucella abortus 2308] 127 PfamA30U 1-108 -42.200 43  PF09538.8; B9JYL9_AGRVS/1-108; Protein of unknown function (FYDLN_acid)
20 CAJ09979.1 ATP/GTP-binding site motif A (P-loop):EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase):3-phosphoshikimate 1-carbo [Brucella abortus 2308] 450 PfamA30U 12-437 -23.300 20  PF00275.18; MURA_ECOLI/6-406; EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Friedberg I, Jaroszewski L, Ye Y, Godzik A. The interplay of fold recognition and experimental structure determination in structural genomics. Curr Opin Struct Biol. 2004 Jun;14(3):307-12.