FFAS03 list of results B.abortus / PfamA30U

Shows best template from each database, and all templates with significant scores covering different query fragments

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# Query Length Result vs. Range Score %id Covered by template(s)
1 CAJ09955.1 ATP/GTP-binding site motif A (P-loop):Bacterial chromosomal replication initiator protein, DnaA:AAA ATPase:Neutral zinc metal [Brucella abortus 2308] 496 PfamA30U 9-72 -17.300 20 PF11638.6; DNAA_LAWIP/5-67; DnaA N-terminal domain
152-376 -91.300 42 PF00308.16; DNAA_STRCO/317-535; Bacterial dnaA protein
402-470 -39.200 62 PF08299.9; D9QS97_ACEAZ/358-426; Bacterial dnaA protein helix-turn-helix
2 CAJ09958.1 DNA polymerase III, beta chain:Inorganic pyrophosphatase [Brucella abortus 2308] 397 PfamA30U 26-146 -60.000 53 PF00712.17; DPO3B_CAUCR/1-121; DNA polymerase III beta subunit, N-terminal domain
155-274 -59.100 44 PF02767.14; DPO3B_PSEPK/129-244; DNA polymerase III beta subunit, central domain
276-396 -41.000 28 PF02768.13; DPO3B_BACSU/253-376; DNA polymerase III beta subunit, C-terminal domain
3 CAJ09959.1 RecF protein:ATP/GTP-binding site motif A (P-loop):Aldehyde dehydrogenase:SMC protein, N-terminal:AAA ATPase [Brucella abortus 2308] 384 PfamA30U 14-364 -30.700 14 PF13175.4; I1YS32_PREI7/1-378; AAA ATPase domain
4 CAJ09960.1 NAD binding site:UBA/THIF-type NAD/FAD binding fold:Aromatic-ring hydroxylase [Brucella abortus 2308] 260 PfamA30U 34-204 -38.600 25 PF00899.19; SAE2_HUMAN/11-443; ThiF family
5 CAJ09961.1 Pyridine nucleotide-disulphide oxidoreductase, class I:D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain [Brucella abortus 2308] 318 PfamA30U 51-313 -44.300 23 PF00389.28; Q9KCG9_BACHD/20-325; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
107-283 -44.700 27 PF02826.17; Q98GE4_RHILO/107-283; D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
6 CAJ09962.1 ATP/GTP-binding site motif A (P-loop):ABC transporter:AAA ATPase [Brucella abortus 2308] 541 PfamA30U 30-475 -11.800 9 PF10443.7; C8VEZ9_EMENI/373-791; RNA12 protein
236-280 -14.700 24 PF08352.10; Q8TTX6_METAC/231-290; Oligopeptide/dipeptide transporter, C-terminal region
302-454 -29.100 29 PF00005.25; YTFR_ECOLI/25-174; ABC transporter
310-489 -13.200 16 PF13401.4; B2UJB3_RALPJ/42-210; AAA domain
7 CAJ09963.1 Binding-protein-dependent transport systems inner membrane component [Brucella abortus 2308] 379 PfamA30U 20-72 -14.600 18 PF12911.5; F2G428_ALTMD/14-66; N-terminal TM domain of oligopeptide transport permease C
191-363 -12.000 20 PF00528.20; YHDY_ECOLI/173-362; Binding-protein-dependent transport system inner membrane component
8 CAJ09964.1 Binding-protein-dependent transport systems inner membrane component [Brucella abortus 2308] 365 PfamA30U 150-359 -7.580 16 PF00528.20; YHDY_ECOLI/173-362; Binding-protein-dependent transport system inner membrane component
9 CAJ09965.1 Bacterial extracellular solute-binding protein, family 5 [Brucella abortus 2308] 604 PfamA30U 112-519 -33.600 19 PF00496.20; Q882P9_PSESM/71-433; Bacterial extracellular solute-binding proteins, family 5 Middle
10 CAJ09966.1 Bacterial extracellular solute-binding protein, family 5 [Brucella abortus 2308] 622 PfamA30U 113-526 -34.600 17 PF00496.20; Q882P9_PSESM/71-433; Bacterial extracellular solute-binding proteins, family 5 Middle
114-567 -9.660 11 PF17374; Q8EV07.1/37-965; Family of unknown function (DUF5396 topsan)
11 CAJ09967.1 conserved hypothetical protein [Brucella abortus 2308] 107 PfamA30U 13-73 -6.370 26 PF02082.18; Q817Y2_BACCR/1-83; Transcriptional regulator
12 CAJ09968.1 conserved hypothetical protein [Brucella abortus 2308] 66 PfamA30U 2-36 -5.970 22 PF12550.6; J6ED67_SACK1/277-355; Transcriptional activator of glycolytic enzymes
13 CAJ09969.1 conserved hypothetical protein [Brucella abortus 2308] 116 PfamA30U 5-106 -6.700 13 PF07267.9; Q2NNY4_NPVHC/1-628; Nucleopolyhedrovirus capsid protein P87
14 CAJ09971.1 conserved domain protein [Brucella abortus 2308] 66 PfamA30U 7-59 -6.780 19 PF08868.8; B7GEU3_ANOFW/15-144; YugN-like family
15 CAJ09972.1 Enoyl-CoA hydratase/isomerase [Brucella abortus 2308] 264 PfamA30U 13-255 -65.900 17 PF00378.18; PKSI_BACSU/10-249; Enoyl-CoA hydratase/isomerase
16 CAJ09973.1 HMG-CoA lyase-like [Brucella abortus 2308] 287 PfamA30U 4-278 -28.100 21 PF00682.17; LEU1_ECOLI/4-273; HMGL-like
17 CAJ09974.1 Biotin/lipoyl attachment:Biotin-requiring enzyme, attachment site:Carbamoyl-phosphate synthase L chain, ATP-binding:Carbamoyl [Brucella abortus 2308] 673 PfamA30U 19-128 -53.800 64 PF00289.20; Q5P6X6_AROAE/1-110; Biotin carboxylase, N-terminal domain
133-345 -23.000 19 PF02786.15; CARB_YEAST/149-353; Carbamoyl-phosphate synthase L chain, ATP binding domain
359-464 -41.700 35 PF02785.17; Q0CM38_ASPTN/307-414; Biotin carboxylase C-terminal domain
603-668 -14.200 25 PF00364.20; BCCP_SOYBN/186-260; Biotin-requiring enzyme
18 CAJ09975.1 Carboxyl transferase family [Brucella abortus 2308] 535 PfamA30U 47-533 -176.000 62 PF01039.20; MCCB_ARATH/93-585; Carboxyl transferase domain
19 CAJ09978.1 unnamed protein product [Brucella abortus 2308] 127 PfamA30U 1-108 -42.200 43 PF09538.8; B9JYL9_AGRVS/1-108; Protein of unknown function (FYDLN_acid)
20 CAJ09979.1 ATP/GTP-binding site motif A (P-loop):EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase):3-phosphoshikimate 1-carbo [Brucella abortus 2308] 450 PfamA30U 12-437 -23.300 20 PF00275.18; MURA_ECOLI/6-406; EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)

FFAS is supported by the NIH grant R01-GM087218-01

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#	Query	Length	Result vs.	Range	Score	%id	Covered by template(s)
1	`CAJ09955.1 ATP/GTP-binding site motif A (P-loop):Bacterial chromosomal replication initiator protein, DnaA:AAA ATPase:Neutral zinc metal [Brucella abortus 2308]`	`496`	`PfamA30U`	`9-72`	`-17.300`	`20`	`PF11638.6; DNAA_LAWIP/5-67; DnaA N-terminal domain`
				`152-376`	`-91.300`	`42`	`PF00308.16; DNAA_STRCO/317-535; Bacterial dnaA protein`
				`402-470`	`-39.200`	`62`	`PF08299.9; D9QS97_ACEAZ/358-426; Bacterial dnaA protein helix-turn-helix`
2	`CAJ09958.1 DNA polymerase III, beta chain:Inorganic pyrophosphatase [Brucella abortus 2308]`	`397`	`PfamA30U`	`26-146`	`-60.000`	`53`	`PF00712.17; DPO3B_CAUCR/1-121; DNA polymerase III beta subunit, N-terminal domain`
				`155-274`	`-59.100`	`44`	`PF02767.14; DPO3B_PSEPK/129-244; DNA polymerase III beta subunit, central domain`
				`276-396`	`-41.000`	`28`	`PF02768.13; DPO3B_BACSU/253-376; DNA polymerase III beta subunit, C-terminal domain`
3	`CAJ09959.1 RecF protein:ATP/GTP-binding site motif A (P-loop):Aldehyde dehydrogenase:SMC protein, N-terminal:AAA ATPase [Brucella abortus 2308]`	`384`	`PfamA30U`	`14-364`	`-30.700`	`14`	`PF13175.4; I1YS32_PREI7/1-378; AAA ATPase domain`
4	`CAJ09960.1 NAD binding site:UBA/THIF-type NAD/FAD binding fold:Aromatic-ring hydroxylase [Brucella abortus 2308]`	`260`	`PfamA30U`	`34-204`	`-38.600`	`25`	`PF00899.19; SAE2_HUMAN/11-443; ThiF family`
5	`CAJ09961.1 Pyridine nucleotide-disulphide oxidoreductase, class I:D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain [Brucella abortus 2308]`	`318`	`PfamA30U`	`51-313`	`-44.300`	`23`	`PF00389.28; Q9KCG9_BACHD/20-325; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain`
				`107-283`	`-44.700`	`27`	`PF02826.17; Q98GE4_RHILO/107-283; D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain`
6	`CAJ09962.1 ATP/GTP-binding site motif A (P-loop):ABC transporter:AAA ATPase [Brucella abortus 2308]`	`541`	`PfamA30U`	`30-475`	`-11.800`	`9`	`PF10443.7; C8VEZ9_EMENI/373-791; RNA12 protein`
				`236-280`	`-14.700`	`24`	`PF08352.10; Q8TTX6_METAC/231-290; Oligopeptide/dipeptide transporter, C-terminal region`
				`302-454`	`-29.100`	`29`	`PF00005.25; YTFR_ECOLI/25-174; ABC transporter`
				`310-489`	`-13.200`	`16`	`PF13401.4; B2UJB3_RALPJ/42-210; AAA domain`
7	`CAJ09963.1 Binding-protein-dependent transport systems inner membrane component [Brucella abortus 2308]`	`379`	`PfamA30U`	`20-72`	`-14.600`	`18`	`PF12911.5; F2G428_ALTMD/14-66; N-terminal TM domain of oligopeptide transport permease C`
				`191-363`	`-12.000`	`20`	`PF00528.20; YHDY_ECOLI/173-362; Binding-protein-dependent transport system inner membrane component`
8	`CAJ09964.1 Binding-protein-dependent transport systems inner membrane component [Brucella abortus 2308]`	`365`	`PfamA30U`	`150-359`	`-7.580`	`16`	`PF00528.20; YHDY_ECOLI/173-362; Binding-protein-dependent transport system inner membrane component`
9	`CAJ09965.1 Bacterial extracellular solute-binding protein, family 5 [Brucella abortus 2308]`	`604`	`PfamA30U`	`112-519`	`-33.600`	`19`	`PF00496.20; Q882P9_PSESM/71-433; Bacterial extracellular solute-binding proteins, family 5 Middle`
10	`CAJ09966.1 Bacterial extracellular solute-binding protein, family 5 [Brucella abortus 2308]`	`622`	`PfamA30U`	`113-526`	`-34.600`	`17`	`PF00496.20; Q882P9_PSESM/71-433; Bacterial extracellular solute-binding proteins, family 5 Middle`
				`114-567`	`-9.660`	`11`	`PF17374; Q8EV07.1/37-965; Family of unknown function (DUF5396 topsan)`
11	`CAJ09967.1 conserved hypothetical protein [Brucella abortus 2308]`	`107`	`PfamA30U`	`13-73`	`-6.370`	`26`	`PF02082.18; Q817Y2_BACCR/1-83; Transcriptional regulator`
12	`CAJ09968.1 conserved hypothetical protein [Brucella abortus 2308]`	`66`	`PfamA30U`	`2-36`	`-5.970`	`22`	`PF12550.6; J6ED67_SACK1/277-355; Transcriptional activator of glycolytic enzymes`
13	`CAJ09969.1 conserved hypothetical protein [Brucella abortus 2308]`	`116`	`PfamA30U`	`5-106`	`-6.700`	`13`	`PF07267.9; Q2NNY4_NPVHC/1-628; Nucleopolyhedrovirus capsid protein P87`
14	`CAJ09971.1 conserved domain protein [Brucella abortus 2308]`	`66`	`PfamA30U`	`7-59`	`-6.780`	`19`	`PF08868.8; B7GEU3_ANOFW/15-144; YugN-like family`
15	`CAJ09972.1 Enoyl-CoA hydratase/isomerase [Brucella abortus 2308]`	`264`	`PfamA30U`	`13-255`	`-65.900`	`17`	`PF00378.18; PKSI_BACSU/10-249; Enoyl-CoA hydratase/isomerase`
16	`CAJ09973.1 HMG-CoA lyase-like [Brucella abortus 2308]`	`287`	`PfamA30U`	`4-278`	`-28.100`	`21`	`PF00682.17; LEU1_ECOLI/4-273; HMGL-like`
17	`CAJ09974.1 Biotin/lipoyl attachment:Biotin-requiring enzyme, attachment site:Carbamoyl-phosphate synthase L chain, ATP-binding:Carbamoyl [Brucella abortus 2308]`	`673`	`PfamA30U`	`19-128`	`-53.800`	`64`	`PF00289.20; Q5P6X6_AROAE/1-110; Biotin carboxylase, N-terminal domain`
				`133-345`	`-23.000`	`19`	`PF02786.15; CARB_YEAST/149-353; Carbamoyl-phosphate synthase L chain, ATP binding domain`
				`359-464`	`-41.700`	`35`	`PF02785.17; Q0CM38_ASPTN/307-414; Biotin carboxylase C-terminal domain`
				`603-668`	`-14.200`	`25`	`PF00364.20; BCCP_SOYBN/186-260; Biotin-requiring enzyme`
18	`CAJ09975.1 Carboxyl transferase family [Brucella abortus 2308]`	`535`	`PfamA30U`	`47-533`	`-176.000`	`62`	`PF01039.20; MCCB_ARATH/93-585; Carboxyl transferase domain`
19	`CAJ09978.1 unnamed protein product [Brucella abortus 2308]`	`127`	`PfamA30U`	`1-108`	`-42.200`	`43`	`PF09538.8; B9JYL9_AGRVS/1-108; Protein of unknown function (FYDLN_acid)`
20	`CAJ09979.1 ATP/GTP-binding site motif A (P-loop):EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase):3-phosphoshikimate 1-carbo [Brucella abortus 2308]`	`450`	`PfamA30U`	`12-437`	`-23.300`	`20`	`PF00275.18; MURA_ECOLI/6-406; EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)`