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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 3034next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 CAJ09955.1 ATP/GTP-binding site motif A (P-loop):Bacterial chromosomal replication initiator protein, DnaA:AAA ATPase:Neutral zinc metal [Brucella abortus 2308] 496 COG0516 7-492 -120.000 31  [L] COG0593 ATPase involved in DNA replication initiation
2 CAJ09958.1 DNA polymerase III, beta chain:Inorganic pyrophosphatase [Brucella abortus 2308] 397 COG0516 26-397 -101.000 30  [L] COG0592 DNA polymerase sliding clamp subunit (PCNA homolog)
3 CAJ09959.1 RecF protein:ATP/GTP-binding site motif A (P-loop):Aldehyde dehydrogenase:SMC protein, N-terminal:AAA ATPase [Brucella abortus 2308] 384 COG0516 14-383 -100.000 25  [L] COG1195 Recombinational DNA repair ATPase (RecF pathway)
4 CAJ09960.1 NAD binding site:UBA/THIF-type NAD/FAD binding fold:Aromatic-ring hydroxylase [Brucella abortus 2308] 260 COG0516 2-260 -102.000 43  [H] KOG2017 Molybdopterin synthase sulfurylase
5 CAJ09961.1 Pyridine nucleotide-disulphide oxidoreductase, class I:D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain [Brucella abortus 2308] 318 COG0516 22-309 -37.600 22  [C] KOG0069 Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily)
53-313 -42.600 20  [K] KOG0067 Transcription factor CtBP
6 CAJ09962.1 ATP/GTP-binding site motif A (P-loop):ABC transporter:AAA ATPase [Brucella abortus 2308] 541 COG0516 2-539 -156.000 56  [R] COG4172 ABC-type uncharacterized transport system, duplicated ATPase component
7 CAJ09963.1 Binding-protein-dependent transport systems inner membrane component [Brucella abortus 2308] 379 COG0516 15-378 -98.300 59  [R] COG4239 ABC-type uncharacterized transport system, permease component
8 CAJ09964.1 Binding-protein-dependent transport systems inner membrane component [Brucella abortus 2308] 365 COG0516 1-364 -130.000 61  [R] COG4174 ABC-type uncharacterized transport system, permease component
9 CAJ09965.1 Bacterial extracellular solute-binding protein, family 5 [Brucella abortus 2308] 604 COG0516 75-578 -41.900 18  [E] COG0747 ABC-type dipeptide transport system, periplasmic component
10 CAJ09966.1 Bacterial extracellular solute-binding protein, family 5 [Brucella abortus 2308] 622 COG0516 26-612 -24.800 13  [R] COG4533 ABC-type uncharacterized transport system, periplasmic component
55-585 -44.500 20  [E] COG0747 ABC-type dipeptide transport system, periplasmic component
11 CAJ09967.1 conserved hypothetical protein [Brucella abortus 2308] 107 COG0516 14-107 -5.960 16  [M] COG2222 Predicted phosphosugar isomerases
12 CAJ09968.1 conserved hypothetical protein [Brucella abortus 2308] 66 COG0516 7-66 -8.320 16  [S] COG3801 Uncharacterized protein conserved in bacteria
13 CAJ09969.1 conserved hypothetical protein [Brucella abortus 2308] 116 COG0516 65-109 -6.430 20  [R] COG1745 Predicted metal-binding protein
14 CAJ09971.1 conserved domain protein [Brucella abortus 2308] 66 COG0516 5-64 -5.560 25  [F] COG0737 5`-nucleotidase/2`,3`-cyclic phosphodiesterase and related esterases
15 CAJ09972.1 Enoyl-CoA hydratase/isomerase [Brucella abortus 2308] 264 COG0516 1-262 -70.800 27  [I] COG1024 Enoyl-CoA hydratase/carnithine racemase
16 CAJ09973.1 HMG-CoA lyase-like [Brucella abortus 2308] 287 COG0516 13-281 -27.200 18  [E] COG0119 Isopropylmalate/homocitrate/citramalate synthases
17 CAJ09974.1 Biotin/lipoyl attachment:Biotin-requiring enzyme, attachment site:Carbamoyl-phosphate synthase L chain, ATP-binding:Carbamoyl [Brucella abortus 2308] 673 COG0516 9-669 -136.000 42  [IE] KOG0238 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit
18 CAJ09975.1 Carboxyl transferase family [Brucella abortus 2308] 535 COG0516 1-535 -188.000 70  [I] COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta)
19 CAJ09978.1 unnamed protein product [Brucella abortus 2308] 127 COG0516 1-124 -45.600 49  [S] COG4530 Uncharacterized protein conserved in bacteria
20 CAJ09979.1 ATP/GTP-binding site motif A (P-loop):EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase):3-phosphoshikimate 1-carbo [Brucella abortus 2308] 450 COG0516 13-440 -59.600 25  [E] COG0128 5-enolpyruvylshikimate-3-phosphate synthase


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Friedberg I, Jaroszewski L, Ye Y, Godzik A. The interplay of fold recognition and experimental structure determination in structural genomics. Curr Opin Struct Biol. 2004 Jun;14(3):307-12.