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anford Burnham Prebys Medical Discovery Institute
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Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:

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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 4334next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|16082692|ref|NP_395138.1| putative transposase (YPCD1.01) [Yersinia pestis CO92] 340 VFDB 3-56 -9.820 16  VFG042429(gi:639968) (afaF-III) AfaF-III [Afimbrial adhesin, AFA-III (AI012)] [Escherichia coli str. A30]
2 gi|16082693|ref|NP_395139.1| transposase/IS protein (YPCD1.02) [Yersinia pestis CO92] 259 VFDB 5-237 -8.900 VFG006582(gi:15645649) (flhF) flagellar biosynthesis protein [Pse5Ac7Ac (AI150)] [Helicobacter pylori 26695]
3 gi|16082696|ref|NP_395142.1| secretion chaperone (YPCD1.05c) [Yersinia pestis CO92] 130 VFDB 1-130 -62.600 100  VFG000372(gi:16082696) (sycE/yerA) chaperone for YopE [TTSS (VF0140)] [Yersinia pestis CO92]
4 gi|16082697|ref|NP_395143.1| putative outer membrane virulence protein (YPCD1.06) [Yersinia pestis CO92] 219 VFDB 1-219 -105.000 100  VFG000373(gi:16082697) (yopE) type III secretion system effector YopE, GTPase activating protein (GAP) [TTSS (VF0140)] [Yersinia pestis CO92]
5 gi|16082698|ref|NP_395144.1| hypothetical protein (YPCD1.07) [Yersinia pestis CO92] 98 VFDB 1-98 -6.600 14  VFG002151(gi:15605597) (copB2) Type III secretion system translocator CopB2 [TTSS (VF0344)] [Chlamydia trachomatis D/UW-3/CX]
6 gi|16082699|ref|NP_395145.1| hypothetical protein (YPCD1.08c) [Yersinia pestis CO92] 99 VFDB 30-83 -5.200 18  VFG002071(gi:15595283) (hcp1) type VI secretion system substrate Hcp1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
7 gi|40548796|ref|NP_395146.2| hypothetical protein (YPCD1.09c) [Yersinia pestis CO92] 80 VFDB 6-60 -5.060 14  VFG002508(gi:53717911) (flgB) flagellar basal-body rod protein FlgB [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
8 gi|16082702|ref|NP_395148.1| plasmid-partitioning protein (YPCD1.12c) [Yersinia pestis CO92] 320 VFDB 49-198 -6.090 VFG000458(gi:16764500) (csgA) curlin major subunit CsgA [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
9 gi|16082703|ref|NP_395149.1| plasmid-partitioning protein SopA (YPCD1.13c) [Yersinia pestis CO92] 388 VFDB 83-379 -24.800 14  VFG043385(gi:15645648) (ylxH) ATP-binding protein [Pse5Ac7Ac (AI150)] [Helicobacter pylori 26695]
10 gi|40548797|ref|NP_954989.1| hypothetical protein (YPCD1.14n) [Yersinia pestis CO92] 65 VFDB 1-62 -4.360 12  VFG041337(gi:52842664) (ankD/legA15) Dot/Icm type IV secretion system effector AnkD/LegA15 [Dot/Icm (SS047)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
11 gi|16082705|ref|NP_395151.1| hypothetical protein (YPCD1.15c) [Yersinia pestis CO92] 152 VFDB 5-152 -6.630 17  VFG000973(gi:15675811) (speB) pyrogenic exotoxin B [SpeB (VF0249)] [Streptococcus pyogenes M1 GAS]
12 gi|16082706|ref|NP_395152.1| hypothetical protein (YPCD1.16c) [Yersinia pestis CO92] 107 VFDB 9-92 -6.810 11  VFG015512(gi:15599408) (phzD1) phenazine biosynthesis protein PhzD, isochorismatase [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1]
13 gi|16082708|ref|NP_395154.1| Yop targeting protein (YPCD1.19c) [Yersinia pestis CO92] 182 VFDB 1-182 -146.000 100  VFG000374(gi:16082708) (yopK/yopQ) type III secretion system effector YopK/YopQ, regulating Yops injection from within host cells [TTSS (VF0140)] [Yersinia pestis CO92]
14 gi|16082709|ref|NP_395155.1| Yop targeted effector (YPCD1.20) [Yersinia pestis CO92] 322 VFDB 1-322 -126.000 100  VFG000375(gi:16082709) (yopT) type III secretion system effector YopT, cysteine protease [TTSS (VF0140)] [Yersinia pestis CO92]
15 gi|16082710|ref|NP_395156.1| YopT chaperone (YPCD1.21) [Yersinia pestis CO92] 132 VFDB 1-132 -70.700 100  VFG000376(gi:16082710) (sycT) chaperone for YopT [TTSS (VF0140)] [Yersinia pestis CO92]
16 gi|16082711|ref|NP_395157.1| hypothetical protein (YPCD1.22c) [Yersinia pestis CO92] 129 VFDB 103-128 -5.360 19  VFG007189(gi:28901197) (vscR2) type III secretion system C-ring protein VscR2 [T3SS2 (VF0409)] [Vibrio parahaemolyticus RIMD 2210633]
17 gi|16082712|ref|NP_395158.1| hypothetical protein (YPCD1.23) [Yersinia pestis CO92] 139 VFDB 8-85 -5.600 15  VFG000032(gi:33591345) (bplG) probable sugar transferase [LPS (VF0033)] [Bordetella pertussis Tohama I]
18 gi|16082715|ref|NP_395161.1| secreted effector protein (YPCD1.26c) [Yersinia pestis CO92] 409 VFDB 1-409 -81.100 100  VFG000377(gi:16082715) (yopM) type III secretion system effector YopM [TTSS (VF0140)] [Yersinia pestis CO92]
19 gi|16082716|ref|NP_395162.1| secreted effector protein (YPCD1.28c) [Yersinia pestis CO92] 306 VFDB 1-306 -86.700 100  VFG000378(gi:16082716) (yopD) type III secretion system hydrophobic translocator, pore protein YopD [TTSS (VF0140)] [Yersinia pestis CO92]
20 gi|16082717|ref|NP_395163.1| secreted effector protein (YPCD1.29c) [Yersinia pestis CO92] 401 VFDB 1-401 -95.200 100  VFG000379(gi:16082717) (yopB) type III secretion system hydrophobic translocator, pore protein YopB [TTSS (VF0140)] [Yersinia pestis CO92]


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Bossy-Wetzel E, Barsoum MJ, Godzik A., Schwarzenbacher R, Lipton SA. Mitochondrial fission in apoptosis, neurodegeneration and aging. Curr Opin Cell Biol. 2003 Dec;15(6):706-16. Review.