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anford Burnham Prebys Medical Discovery Institute
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Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:

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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 4334next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|16082692|ref|NP_395138.1| putative transposase (YPCD1.01) [Yersinia pestis CO92] 340 PfamA30U 2-42 -12.500 26  PF11427.6; B4MU89_DROWI/3-52; Tc3 transposase
2-111 -12.300 PF01710.14; P74195_SYNY3/1-119; Transposase
115-244 -16.500 PF00665.24; P71644_MYCTU/136-254; Integrase core domain
121-295 -12.600 PF02914.13; TRA_HAEIN/267-485; Bacteriophage Mu transposase
2 gi|16082693|ref|NP_395139.1| transposase/IS protein (YPCD1.02) [Yersinia pestis CO92] 259 PfamA30U 56-235 -86.000 32  PF01695.15; Y4IQ_RHISN/60-238; IstB-like ATP binding protein
3 gi|16082696|ref|NP_395142.1| secretion chaperone (YPCD1.05c) [Yersinia pestis CO92] 130 PfamA30U 7-118 -38.500 17  PF05932.11; Q87P37_VIBPA/6-126; Tir chaperone protein (CesT) family
4 gi|16082697|ref|NP_395143.1| putative outer membrane virulence protein (YPCD1.06) [Yersinia pestis CO92] 219 PfamA30U 1-126 -34.500 100  PF09020.8; YOPE_YERPE/1-126; YopE, N terminal
127-195 -41.000 39  PF03545.11; Q9I788_PSEAE/132-201; Yersinia virulence determinant (YopE)
5 gi|16082698|ref|NP_395144.1| hypothetical protein (YPCD1.07) [Yersinia pestis CO92] 98 PfamA30U 5-97 -7.770 13  PF09323.8; Q5M538_STRT2/1-178; Domain of unknown function (DUF1980 topsan)
6 gi|16082699|ref|NP_395145.1| hypothetical protein (YPCD1.08c) [Yersinia pestis CO92] 99 PfamA30U 5-89 -22.900 21  PF05016.13; A0A023JAP0_SALTM/4-92; ParE toxin of type II toxin-antitoxin system, parDE
7 gi|40548796|ref|NP_395146.2| hypothetical protein (YPCD1.09c) [Yersinia pestis CO92] 80 PfamA30U 1-80 -48.200 33  PF03693.12; PARD1_MYCTU/1-80; Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH
8 gi|16082702|ref|NP_395148.1| plasmid-partitioning protein (YPCD1.12c) [Yersinia pestis CO92] 320 PfamA30U 72-156 -22.900 27  PF02195.16; PARB_CHLTR/12-105; ParB-like nuclease domain
157-317 -22.200 PF07506.9; Q9F5B9_AGRRH/157-326; RepB plasmid partitioning protein
9 gi|16082703|ref|NP_395149.1| plasmid-partitioning protein SopA (YPCD1.13c) [Yersinia pestis CO92] 388 PfamA30U 106-291 -62.900 26  PF13614.4; R7M636_9CLOT/2-188; AAA domain
107-380 -35.500 13  PF07015.9; Q1M9M0_RHIL3/1-231; VirC1 protein
109-348 -57.600 22  PF01656.21; P72976_SYNY3/5-270; CobQ/CobB/MinD/ParA nucleotide binding domain
10 gi|40548797|ref|NP_954989.1| hypothetical protein (YPCD1.14n) [Yersinia pestis CO92] 65 PfamA30U 18-65 -23.100 25  PF13333.4; Q5F880_NEIG1/215-270; Integrase core domain
11 gi|16082705|ref|NP_395151.1| hypothetical protein (YPCD1.15c) [Yersinia pestis CO92] 152 PfamA30U 23-78 -17.800 21  PF13276.4; Q1WUI0_LACS1/209-271; HTH-like domain
99-152 -11.500 11  PF02914.13; TRA_HAEIN/267-485; Bacteriophage Mu transposase
12 gi|16082706|ref|NP_395152.1| hypothetical protein (YPCD1.16c) [Yersinia pestis CO92] 107 PfamA30U 8-83 -42.900 44  PF01527.18; G3XCY0_PSEAE/3-78; Transposase
13 gi|16082708|ref|NP_395154.1| Yop targeting protein (YPCD1.19c) [Yersinia pestis CO92] 182 PfamA30U 25-171 -6.860 17  PF02476.13; Q285F6_9ALPH/8-166; US2 family
14 gi|16082709|ref|NP_395155.1| Yop targeted effector (YPCD1.20) [Yersinia pestis CO92] 322 PfamA30U 103-320 -81.200 100  PF03543.12; YOPT_YERPE/103-320; Yersinia/Haemophilus virulence surface antigen
15 gi|16082710|ref|NP_395156.1| YopT chaperone (YPCD1.21) [Yersinia pestis CO92] 132 PfamA30U 8-114 -29.600 15  PF05932.11; Q87P37_VIBPA/6-126; Tir chaperone protein (CesT) family
16 gi|16082711|ref|NP_395157.1| hypothetical protein (YPCD1.22c) [Yersinia pestis CO92] 129 PfamA30U 4-127 -7.470 16  PF01184.17; A7TND9_VANPO/71-277; GPR1/FUN34/yaaH family
17 gi|16082712|ref|NP_395158.1| hypothetical protein (YPCD1.23) [Yersinia pestis CO92] 139 PfamA30U 8-127 -7.170 21  PF01698.14; W5BCH7_WHEAT/1-380; Floricaula / Leafy protein
18 gi|16082715|ref|NP_395161.1| secreted effector protein (YPCD1.26c) [Yersinia pestis CO92] 409 PfamA30U 136-263 -19.700 18  PF14580.4; H3BFR2_LATCH/1-175; Leucine-rich repeat
19 gi|16082716|ref|NP_395162.1| secreted effector protein (YPCD1.28c) [Yersinia pestis CO92] 306 PfamA30U 59-306 -64.400 100  PF05844.10; O68699_YERPE/13-306; YopD protein
20 gi|16082717|ref|NP_395163.1| secreted effector protein (YPCD1.29c) [Yersinia pestis CO92] 401 PfamA30U 108-397 -51.600 13  PF04888.10; BIPB_BURPS/286-616; Secretion system effector C (SseC) like family


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ye Y, Li Z, and Godzik A. Modeling and Analyzing Three-Dimensional Structures of Human Disease Proteins Pacific Symposium on Biocomputing 11:439-450(2006) [PDF]