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anford Burnham Prebys Medical Discovery Institute
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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 2581next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 VFG000851(gi:2576413) (aafA) major fimbrial subunit of aggregative adherence fimbria II AafA [AAFs (VF0214)] [Escherichia coli str. 042] 160 PfamA30U 22-160 -13.900 13  PF04619.10; O07093_ECOLX/22-160; Dr-family adhesin
2 VFG000854(gi:4689214) (aafB) invasin homolog AafB [AAFs (VF0214)] [Escherichia coli str. 042] 146 PfamA30U 2-144 -22.400 12  PF06443.9; Q47405_ECOLX/2-166; SEF14-like adhesin
34-139 -56.700 24  PF05775.10; Q7CR56_SALTY/44-148; Enterobacteria AfaD invasin protein
3 VFG000853(gi:4689215) (aafC) aggregative adherence fimbria II usher protein AafC [AAFs (VF0214)] [Escherichia coli str. 042] 856 PfamA30U 33-187 -50.400 37  PF13954.4; A7MEY2_CROS8/8-155; PapC N-terminal domain
204-764 -123.000 30  PF00577.18; A8AF47_CITK8/198-751; Outer membrane usher protein
773-839 -27.400 35  PF13953.4; A6TGZ4_KLEP7/658-724; PapC C-terminal domain
4 VFG000852(gi:4596718) (aafD) chaperone protein AafD [AAFs (VF0214)] [Escherichia coli str. 042] 241 PfamA30U 31-159 -63.100 30  PF00345.18; YADV_ECOLI/27-151; Pili and flagellar-assembly chaperone, PapD N-terminal domain
181-238 -26.200 37  PF02753.15; I0DNL8_PROSM/205-264; Pili assembly chaperone PapD, C-terminal domain
5 VFG000865(gi:387604907) (aap/aspU) Dispersin [Dispersin (VF0215)] [Escherichia coli O44:H18 042] 116 PfamA30U 1-102 -8.600 13  PF12389.6; Q8ENF4_OCEIH/2-208; Camelysin metallo-endopeptidase
6 VFG044024(gi:169639785) (ACA60977) alpha-toxin [alpha-toxin (septicum) (VF0416)] [Clostridium septicum str. NH2] 443 PfamA30U 55-406 -71.200 18  PF01117.18; A7SFW2_NEMVE/192-549; Aerolysin toxin
7 VFG000110(gi:15641470) (ace) accessory cholera enterotoxin [Ace (VF0130)] [Vibrio cholerae O1 biovar El Tor str. N16961] 97 PfamA30U 34-93 -11.000 13  PF10734.7; Q9JRT4_NEIMB/3-82; Protein of unknown function (DUF2523 topsan)
8 VFG002166(gi:29375675) (ace) collagen adhesin protein [Ace (VF0355)] [Enterococcus faecalis V583] 674 PfamA30U 61-297 -31.200 12  PF11766.6; G8BJ60_CANPC/58-305; Cell-wall agglutinin N-terminal ligand-sugar binding
279-649 -11.600 10  PF03154.13; R9PXW0_RAT/567-1558; Atrophin-1 family
382-577 -12.300 10  PF15708.3; G7PVG9_MACFA/1-223; Proline-rich protein family 20
382-646 -12.200 PF11725.6; Q887C9_PSESM/17-1794; Pathogenicity factor
9 VFG000103(gi:15640861) (acfA) accessory colonization factor AcfA [ACF (VF0127)] [Vibrio cholerae O1 biovar El Tor str. N16961] 215 PfamA30U 1-215 -76.400 12  PF06316.9; Q9LA63_9CAUD/1-199; Enterobacterial Ail/Lom protein
10 VFG000104(gi:15640857) (acfB) accessory colonization factor AcfB [ACF (VF0127)] [Vibrio cholerae O1 biovar El Tor str. N16961] 626 PfamA30U 32-257 -12.400 PF02743.16; D3EMN3_GEOS4/45-297; Cache domain
99-235 -13.500 16  PF17155.2; A8AHH5_CITK8/31-304; Gammaproteobacterial periplasmic sensor domain
297-625 -23.100 PF06109.11; K7JEL9_NASVI/32-340; Haemolysin E (HlyE)
364-606 -43.200 11  PF03532.11; O50963_BORBU/3-255; OMS28 porin
11 VFG000105(gi:15640858) (acfC) accessory colonization factor AcfC [ACF (VF0127)] [Vibrio cholerae O1 biovar El Tor str. N16961] 256 PfamA30U 4-254 -12.400 11  PF02030.13; Y045_MYCGE/1-482; Hypothetical lipoprotein (MG045 family)
39-247 -40.800 16  PF01547.23; CYSP_ECOLI/33-278; Bacterial extracellular solute-binding protein
12 VFG000106(gi:15640862) (acfD) accessory colonization factor AcfD [ACF (VF0127)] [Vibrio cholerae O1 biovar El Tor str. N16961] 1520 PfamA30U 392-566 -63.100 64  PF13322.4; Q87GE0_VIBPA/378-553; Domain of unknown function (DUF4092 topsan)
1072-1471 -40.700 23  PF13402.4; TCAF_DANRE/515-886; Peptidase M60, enhancin and enhancin-like
13 VFG043518(gi:29134931) (acm) collagen adhesin precursor Acm [Acm (VF0419)] [Enterococcus faecium str. TX2555] 721 PfamA30U 1-143 -11.800 11  PF16341.3; R5U6I7_9BACE/2-141; Domain of unknown function (DUF4971 topsan)
60-298 -36.300 PF11766.6; G8BJ60_CANPC/58-305; Cell-wall agglutinin N-terminal ligand-sugar binding
531-647 -26.300 12  PF16570.3; Q8DYR6_STRA5/379-514; Gram-positive pilin backbone subunit 3, Cna-B-like domain
534-615 -34.000 42  PF05738.11; F7V5S1_CLOSS/768-856; Cna protein B-type domain
14 VFG005770(gi:22536832) (acpC) acyl carrier protein AcpC [Beta-hemolysin/cytolysin (CVF171)] [Streptococcus agalactiae 2603V/R] 101 PfamA30U 12-101 -35.200 14  PF14573.4; B9Q5Z8_TOXGO/144-239; Acyl-carrier
15 VFG011429(gi:17987394) (acpXL) acyl carrier protein [LPS (CVF383)] [Brucella melitensis bv. 1 str. 16M] 93 PfamA30U 1-85 -42.200 11  PF14573.4; B9Q5Z8_TOXGO/144-239; Acyl-carrier
16 VFG011430(gi:17987758) (acpXL) acyl carrier protein [LPS (CVF383)] [Brucella melitensis bv. 1 str. 16M] 78 PfamA30U 1-78 -44.500 26  PF14573.4; B9Q5Z8_TOXGO/144-239; Acyl-carrier
17 VFG000068(gi:16802250) (actA) actin-assembly inducing protein precursor [ActA (VF0066)] [Listeria monocytogenes EGD-e] 639 PfamA30U 7-639 -163.000 100  PF05058.10; ACTA_LISMO/7-639; ActA Protein
18 VFG002420(gi:21281752) (adsA) Adenosine synthase A [AdsA (VF0422)] [Streptococcus pyogenes MGAS315] 772 PfamA30U 142-395 -15.000 10  PF14582.4; E4U4F7_OCEP5/1-237; Metallophosphoesterase, calcineurin superfamily
150-464 -12.400 10  PF09587.8; Q1GMM5_RUEST/3-314; Bacterial capsule synthesis protein PGA_cap
435-610 -51.500 29  PF02872.16; H9JWY4_BOMMO/1512-1686; 5`-nucleotidase, C-terminal domain
19 VFG042423(gi:218921796) (afaA) fimbrial major subunit AfaA [Afimbrial adhesin, AFA-I, mannose-resistant adhesin (AI010)] [Escherichia coli O25b:H4 str. FV9863] 101 PfamA30U 1-89 -47.200 40  PF03333.11; A0A0E1L7V1_ECOLX/3-96; Adhesin biosynthesis transcription regulatory protein
20 VFG042441(gi:13236678) (afaA-VIII) AfaA-VIII [Afimbrial adhesin, AfaE-VIII (AI015)] [Escherichia coli str. 239 KH 89] 127 PfamA30U 11-103 -47.100 38  PF03333.11; A0A0E1L7V1_ECOLX/3-96; Adhesin biosynthesis transcription regulatory protein


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ye Y, Li Z, and Godzik A. Modeling and Analyzing Three-Dimensional Structures of Human Disease Proteins Pacific Symposium on Biocomputing 11:439-450(2006) [PDF]