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anford Burnham Prebys Medical Discovery Institute
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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 2581next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 VFG000851(gi:2576413) (aafA) major fimbrial subunit of aggregative adherence fimbria II AafA [AAFs (VF0214)] [Escherichia coli str. 042] 160 PDB0516 36-160 -71.800 100  2mpv_A mol:protein length:145 Major fimbrial subunit of aggregative adheren
2 VFG000854(gi:4689214) (aafB) invasin homolog AafB [AAFs (VF0214)] [Escherichia coli str. 042] 146 PDB0516 19-146 -68.900 96  4or1_A mol:protein length:155 Invasin homolog AafB, Major fimbrial subunit
3 VFG000853(gi:4689215) (aafC) aggregative adherence fimbria II usher protein AafC [AAFs (VF0214)] [Escherichia coli str. 042] 856 PDB0516 31-855 -185.000 34  3rfz_B mol:protein length:843 Outer membrane usher protein, type 1 fimbrial
4 VFG000852(gi:4596718) (aafD) chaperone protein AafD [AAFs (VF0214)] [Escherichia coli str. 042] 241 PDB0516 10-241 -100.000 64  4djm_A mol:protein length:239 DraB
5 VFG000865(gi:387604907) (aap/aspU) Dispersin [Dispersin (VF0215)] [Escherichia coli O44:H18 042] 116 PDB0516 22-115 -46.100 100  2jvu_A mol:protein length:104 DISPERSIN
6 VFG044024(gi:169639785) (ACA60977) alpha-toxin [alpha-toxin (septicum) (VF0416)] [Clostridium septicum str. NH2] 443 PDB0516 46-428 -73.900 21  1pre_A mol:protein length:470 PROAEROLYSIN
7 VFG000110(gi:15641470) (ace) accessory cholera enterotoxin [Ace (VF0130)] [Vibrio cholerae O1 biovar El Tor str. N16961] 97 PDB0516 46-97 -6.030 12  1ej5_A mol:protein length:107 WISKOTT-ALDRICH SYNDROME PROTEIN
8 VFG002166(gi:29375675) (ace) collagen adhesin protein [Ace (VF0355)] [Enterococcus faecalis V583] 674 PDB0516 27-367 -55.800 98  2z1p_A mol:protein length:348 Collagen adhesin protein
328-572 -13.500 4cwu_T mol:protein length:368 CORE-CAPSID BRIDGING PROTEIN
9 VFG000103(gi:15640861) (acfA) accessory colonization factor AcfA [ACF (VF0127)] [Vibrio cholerae O1 biovar El Tor str. N16961] 215 PDB0516 4-215 -75.500 15  2k0l_A mol:protein length:216 Outer membrane protein A
10 VFG000104(gi:15640857) (acfB) accessory colonization factor AcfB [ACF (VF0127)] [Vibrio cholerae O1 biovar El Tor str. N16961] 626 PDB0516 26-277 -40.200 23  5ave_A mol:protein length:257 Methyl-accepting chemotaxis (MCP) signaling d
294-626 -43.100 26  3zx6_A mol:protein length:341 HAMP, METHYL-ACCEPTING CHEMOTAXIS PROTEIN I
331-625 -49.300 22  2ch7_A mol:protein length:309 METHYL-ACCEPTING CHEMOTAXIS PROTEIN
11 VFG000105(gi:15640858) (acfC) accessory colonization factor AcfC [ACF (VF0127)] [Vibrio cholerae O1 biovar El Tor str. N16961] 256 PDB0516 7-256 -103.000 93  4jb7_A mol:protein length:256 Accessory colonization factor AcfC
12 VFG000106(gi:15640862) (acfD) accessory colonization factor AcfD [ACF (VF0127)] [Vibrio cholerae O1 biovar El Tor str. N16961] 1520 PDB0516 1-728 -11.000 12  2vz8_A mol:protein length:2512 FATTY ACID SYNTHASE
60-701 -12.000 11  2wan_A mol:protein length:921 PULLULANASE
1048-1518 -45.100 18  4fca_A mol:protein length:525 Conserved domain protein
13 VFG043518(gi:29134931) (acm) collagen adhesin precursor Acm [Acm (VF0419)] [Enterococcus faecium str. TX2555] 721 PDB0516 23-438 -45.800 13  3is1_X mol:protein length:446 Uro-adherence factor A
26-368 -54.700 20  2z1p_A mol:protein length:348 Collagen adhesin protein
28-336 -64.200 44  2f68_X mol:protein length:313 Collagen adhesin
431-711 -61.400 24  1d2p_A mol:protein length:373 COLLAGEN ADHESIN
14 VFG005770(gi:22536832) (acpC) acyl carrier protein AcpC [Beta-hemolysin/cytolysin (CVF171)] [Streptococcus agalactiae 2603V/R] 101 PDB0516 12-96 -39.600 21  2l4b_A mol:protein length:88 Acyl carrier protein
15 VFG011429(gi:17987394) (acpXL) acyl carrier protein [LPS (CVF383)] [Brucella melitensis bv. 1 str. 16M] 93 PDB0516 1-93 -51.600 79  2kw2_A mol:protein length:101 Specialized acyl carrier protein
16 VFG011430(gi:17987758) (acpXL) acyl carrier protein [LPS (CVF383)] [Brucella melitensis bv. 1 str. 16M] 78 PDB0516 1-78 -52.600 100  2n57_A mol:protein length:78 Acyl carrier protein
17 VFG000068(gi:16802250) (actA) actin-assembly inducing protein precursor [ActA (VF0066)] [Listeria monocytogenes EGD-e] 639 PDB0516 605-638 -8.890 23  2llm_A mol:protein length:43 Amyloid beta A4 protein
18 VFG002420(gi:21281752) (adsA) Adenosine synthase A [AdsA (VF0422)] [Streptococcus pyogenes MGAS315] 772 PDB0516 77-527 -10.700 13  4fbk_A mol:protein length:472 DNA repair and telomere maintenance protein n
117-647 -103.000 25  1ush_A mol:protein length:550 5`-NUCLEOTIDASE
19 VFG042423(gi:218921796) (afaA) fimbrial major subunit AfaA [Afimbrial adhesin, AFA-I, mannose-resistant adhesin (AI010)] [Escherichia coli O25b:H4 str. FV9863] 101 PDB0516 1-100 -49.400 36  3m8j_A mol:protein length:111 FocB protein
20 VFG042441(gi:13236678) (afaA-VIII) AfaA-VIII [Afimbrial adhesin, AfaE-VIII (AI015)] [Escherichia coli str. 239 KH 89] 127 PDB0516 11-115 -48.500 35  3m8j_A mol:protein length:111 FocB protein


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Bossy-Wetzel E, Barsoum MJ, Godzik A., Schwarzenbacher R, Lipton SA. Mitochondrial fission in apoptosis, neurodegeneration and aging. Curr Opin Cell Biol. 2003 Dec;15(6):706-16. Review.