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anford Burnham Prebys Medical Discovery Institute
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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 2581next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 VFG000851(gi:2576413) (aafA) major fimbrial subunit of aggregative adherence fimbria II AafA [AAFs (VF0214)] [Escherichia coli str. 042] 160 H.sapiens 36-154 -7.260 16  sp|Q5JPE7|NOMO2_HUMAN(removed signalp:1-31) Nodal modulator 2 OS=Homo sapiens GN=NOMO2 PE=1 SV=1 (Range: 451-750)
2 VFG000854(gi:4689214) (aafB) invasin homolog AafB [AAFs (VF0214)] [Escherichia coli str. 042] 146 H.sapiens 23-146 -7.000 sp|Q3ZCW2|LEGL_HUMAN Galectin-related protein OS=Homo sapiens GN=GRP PE=1 SV=2
3 VFG000853(gi:4689215) (aafC) aggregative adherence fimbria II usher protein AafC [AAFs (VF0214)] [Escherichia coli str. 042] 856 H.sapiens 264-395 -6.520 13  sp|Q6JVE9|LCN8_HUMAN(removed signalp:1-25) Epididymal-specific lipocalin-8 OS=Homo sapiens GN=LCN8 PE=2 SV=1
4 VFG000852(gi:4596718) (aafD) chaperone protein AafD [AAFs (VF0214)] [Escherichia coli str. 042] 241 H.sapiens 31-231 -9.870 13  sp|Q6ZU64|CC108_HUMAN Coiled-coil domain-containing protein 108 OS=Homo sapiens GN=CCDC108 PE=2 SV=2 (Range: 601-900)
33-192 -10.000 12  sp|Q4G0P3|HYDIN_HUMAN Hydrocephalus-inducing protein homolog OS=Homo sapiens GN=HYDIN PE=1 SV=2 (Range: 1051-1350)
5 VFG000865(gi:387604907) (aap/aspU) Dispersin [Dispersin (VF0215)] [Escherichia coli O44:H18 042] 116 H.sapiens 2-116 -7.500 11  sp|Q9P2R6|RERE_HUMAN Arginine-glutamic acid dipeptide repeats protein OS=Homo sapiens GN=RERE PE=1 SV=2 (Range: 151-450)
6 VFG044024(gi:169639785) (ACA60977) alpha-toxin [alpha-toxin (septicum) (VF0416)] [Clostridium septicum str. NH2] 443 H.sapiens 142-268 -8.240 11  sp|P19823|ITIH2_HUMAN(removed signalp:1-18) Inter-alpha-trypsin inhibitor heavy chain H2 OS=Homo sapiens GN=ITIH2 PE=1 SV=2 (Range: 1-300)
7 VFG000110(gi:15641470) (ace) accessory cholera enterotoxin [Ace (VF0130)] [Vibrio cholerae O1 biovar El Tor str. N16961] 97 H.sapiens 29-93 -8.280 sp|Q01831|XPC_HUMAN DNA repair protein complementing XP-C cells OS=Homo sapiens GN=XPC PE=1 SV=4 (Range: 1-300)
8 VFG002166(gi:29375675) (ace) collagen adhesin protein [Ace (VF0355)] [Enterococcus faecalis V583] 674 H.sapiens 298-594 -13.200 10  sp|Q9C0C2|TB182_HUMAN 182 kDa tankyrase-1-binding protein OS=Homo sapiens GN=TNKS1BP1 PE=1 SV=4 (Range: 1-300)
332-623 -18.100 12  sp|Q9P2P1|NYNRI_HUMAN Protein NYNRIN OS=Homo sapiens GN=NYNRIN PE=1 SV=3 (Range: 451-750)
356-659 -15.600 10  sp|Q9Y3S1|WNK2_HUMAN Serine/threonine-protein kinase WNK2 OS=Homo sapiens GN=WNK2 PE=1 SV=4 (Range: 751-1050)
9 VFG000103(gi:15640861) (acfA) accessory colonization factor AcfA [ACF (VF0127)] [Vibrio cholerae O1 biovar El Tor str. N16961] 215 H.sapiens 43-215 -7.020 sp|P45880|VDAC2_HUMAN Voltage-dependent anion-selective channel protein 2 OS=Homo sapiens GN=VDAC2 PE=1 SV=2
10 VFG000104(gi:15640857) (acfB) accessory colonization factor AcfB [ACF (VF0127)] [Vibrio cholerae O1 biovar El Tor str. N16961] 626 H.sapiens 4-279 -30.700 13  sp|Q5VU97|CAHD1_HUMAN(removed signalp:1-37) VWFA and cache domain-containing protein 1 OS=Homo sapiens GN=CACHD1 PE=1 SV=2 (Range: 601-900)
112-381 -24.900 11  sp|Q9NY47|CA2D2_HUMAN Voltage-dependent calcium channel subunit alpha-2/delta-2 OS=Homo sapiens GN=CACNA2D2 PE=1 SV=1 (Range: 451-750)
318-624 -17.600 10  sp|Q9Y4G6|TLN2_HUMAN Talin-2 OS=Homo sapiens GN=TLN2 PE=1 SV=4 (Range: 1351-1650)
11 VFG000105(gi:15640858) (acfC) accessory colonization factor AcfC [ACF (VF0127)] [Vibrio cholerae O1 biovar El Tor str. N16961] 256 H.sapiens 26-254 -6.700 12  sp|Q92841|DDX17_HUMAN Probable ATP-dependent RNA helicase DDX17 OS=Homo sapiens GN=DDX17 PE=1 SV=1 (Range: 151-450)
12 VFG000106(gi:15640862) (acfD) accessory colonization factor AcfD [ACF (VF0127)] [Vibrio cholerae O1 biovar El Tor str. N16961] 1520 H.sapiens 448-725 -13.400 14  sp|A6NFQ2|F115C_HUMAN Protein FAM115C OS=Homo sapiens GN=FAM115C PE=2 SV=2 (Range: 151-450)
466-839 -13.200 11  sp|Q9Y4C2|F115A_HUMAN Protein FAM115A OS=Homo sapiens GN=FAM115A PE=1 SV=3 (Range: 1-300)
1004-1297 -21.300 18  sp|Q9Y4C2|F115A_HUMAN Protein FAM115A OS=Homo sapiens GN=FAM115A PE=1 SV=3 (Range: 451-750)
1148-1482 -39.900 22  sp|Q9Y4C2|F115A_HUMAN Protein FAM115A OS=Homo sapiens GN=FAM115A PE=1 SV=3 (Range: 601-900)
1304-1518 -35.700 17  sp|A6NFQ2|F115C_HUMAN Protein FAM115C OS=Homo sapiens GN=FAM115C PE=2 SV=2 (Range: 751-919)
13 VFG043518(gi:29134931) (acm) collagen adhesin precursor Acm [Acm (VF0419)] [Enterococcus faecium str. TX2555] 721 H.sapiens 1-133 -10.900 10  sp|Q9BY50|SC11C_HUMAN Signal peptidase complex catalytic subunit SEC11C OS=Homo sapiens GN=SEC11C PE=1 SV=3
339-627 -15.600 12  sp|Q5JPE7|NOMO2_HUMAN(removed signalp:1-31) Nodal modulator 2 OS=Homo sapiens GN=NOMO2 PE=1 SV=1 (Range: 1-300)
14 VFG005770(gi:22536832) (acpC) acyl carrier protein AcpC [Beta-hemolysin/cytolysin (CVF171)] [Streptococcus agalactiae 2603V/R] 101 H.sapiens 13-94 -24.900 24  sp|O14561|ACPM_HUMAN Acyl carrier protein, mitochondrial OS=Homo sapiens GN=NDUFAB1 PE=1 SV=3
15 VFG011429(gi:17987394) (acpXL) acyl carrier protein [LPS (CVF383)] [Brucella melitensis bv. 1 str. 16M] 93 H.sapiens 1-76 -31.600 25  sp|O14561|ACPM_HUMAN Acyl carrier protein, mitochondrial OS=Homo sapiens GN=NDUFAB1 PE=1 SV=3
16 VFG011430(gi:17987758) (acpXL) acyl carrier protein [LPS (CVF383)] [Brucella melitensis bv. 1 str. 16M] 78 H.sapiens 1-76 -32.500 36  sp|O14561|ACPM_HUMAN Acyl carrier protein, mitochondrial OS=Homo sapiens GN=NDUFAB1 PE=1 SV=3
17 VFG000068(gi:16802250) (actA) actin-assembly inducing protein precursor [ActA (VF0066)] [Listeria monocytogenes EGD-e] 639 H.sapiens 3-325 -16.200 10  sp|Q8NC44|F134A_HUMAN Protein FAM134A OS=Homo sapiens GN=FAM134A PE=1 SV=3
3-356 -9.510 sp|O60320|F1891_HUMAN Protein FAM189A1 OS=Homo sapiens GN=FAM189A1 PE=2 SV=4
489-634 -9.670 10  sp|Q9HDC5|JPH1_HUMAN Junctophilin-1 OS=Homo sapiens GN=JPH1 PE=1 SV=2 (Range: 451-661)
521-639 -10.100 14  sp|Q86YL7|PDPN_HUMAN(removed signalp:1-22) Podoplanin OS=Homo sapiens GN=PDPN PE=1 SV=3
18 VFG002420(gi:21281752) (adsA) Adenosine synthase A [AdsA (VF0422)] [Streptococcus pyogenes MGAS315] 772 H.sapiens 117-422 -11.100 11  sp|Q9BRF8|CPPED_HUMAN Calcineurin-like phosphoesterase domain-containing protein 1 OS=Homo sapiens GN=CPPED1 PE=1 SV=3
147-653 -94.600 26  sp|P21589|5NTD_HUMAN(removed signalp:1-26) 5`-nucleotidase OS=Homo sapiens GN=NT5E PE=1 SV=1
19 VFG042423(gi:218921796) (afaA) fimbrial major subunit AfaA [Afimbrial adhesin, AFA-I, mannose-resistant adhesin (AI010)] [Escherichia coli O25b:H4 str. FV9863] 101 H.sapiens 36-74 -6.500 17  sp|Q8N3X6|LCORL_HUMAN Ligand-dependent nuclear receptor corepressor-like protein OS=Homo sapiens GN=LCORL PE=2 SV=4 (Range: 451-602)
20 VFG042441(gi:13236678) (afaA-VIII) AfaA-VIII [Afimbrial adhesin, AfaE-VIII (AI015)] [Escherichia coli str. 239 KH 89] 127 H.sapiens 12-127 -7.680 16  sp|Q9H0A8|COMD4_HUMAN COMM domain-containing protein 4 OS=Homo sapiens GN=COMMD4 PE=1 SV=1


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Bossy-Wetzel E, Barsoum MJ, Godzik A., Schwarzenbacher R, Lipton SA. Mitochondrial fission in apoptosis, neurodegeneration and aging. Curr Opin Cell Biol. 2003 Dec;15(6):706-16. Review.