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anford Burnham Prebys Medical Discovery Institute
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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 1872next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 TM0001 TM0001 281882 Purified-2001-08-24 41 SCOP206 9-39 -4.960 32  d1skza1 g.3.15.1 (A:7-58) Factor Xa inhibitor antistasin {Mexican leech (Haementeria officinalis) [TaxId: 6410]}
2 TM0002 TM0002 281883 Purified-2001-08-29 41 SCOP206 8-35 -4.880 32  d2j01s1 c.55.4.1 (S:23-108) Ribosomal protein L18 (L18p) {Thermus thermophilus [TaxId: 274]}
3 TM0003 TM0003 281884 Purified-2001-12-06 40 SCOP206 17-40 -4.170 12  d2idob_ a.237.1.1 (B:) Homolog of theta (HOT) {Bacteriophage P1 [TaxId: 10678]}
4 TM0004 TM0004 281885 Purified-2004-07-19 31 SCOP206 10-29 -3.660 25  d2wsda3 b.6.1.0 (A:357-512) automated matches {Bacillus subtilis [TaxId: 1423]}
5 TM0005 TM0005 281886 Purified-2001-01-30 650 SCOP206 136-448 -15.400 17  d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}
169-619 -14.200 16  g1qhh.1 c.37.1.19 (A:,B:,C:,D:) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}
6 TM0006 TM0006 281887 Diffraction|HSQC-2004-07-13 345 SCOP206 2-124 -54.800 100  d2zada1 d.54.1.0 (A:2-124) automated matches {Thermotoga maritima [TaxId: 243274]}
126-345 -92.800 100  d2zada2 c.1.11.0 (A:125-345) automated matches {Thermotoga maritima [TaxId: 243274]}
7 TM0007 TM0007 281888 Purified-2004-07-19 438 SCOP206 177-434 -19.100 15  d2f4ma1 d.3.1.4 (A:164-450) Peptide:N-glycanase 1, PNG1 {Mouse (Mus musculus) [TaxId: 10090]}
8 TM0008 TM0008 281889 Crystal|NMR-2001-04-01 224 SCOP206 2-222 -81.500 23  d4coga_ c.8.8.0 (A:) automated matches {Burkholderia cenocepacia [TaxId: 216591]}
9 TM0009 TM0009 281890 Purified-2001-02-14 142 SCOP206 2-141 -58.100 32  d1vjxa1 a.25.1.1 (A:1-145) Hypothetical protein TM1526 {Thermotoga maritima [TaxId: 2336]}
10 TM0010 TM0010 281891 Purified-2005-03-03 607 SCOP206 6-96 -25.300 31  d1m2da_ c.47.1.11 (A:) Thioredoxin-like 2Fe-2S ferredoxin {Aquifex aeolicus [TaxId: 63363]}
104-349 -82.100 48  d3iam11 c.142.1.1 (1:2-249) automated matches {Thermus thermophilus HB8 [TaxId: 300852]}
351-434 -37.400 44  d3iam12 d.15.13.0 (1:250-333) automated matches {Thermus thermophilus HB8 [TaxId: 300852]}
435-536 -46.700 42  d3iam13 a.29.12.0 (1:334-438) automated matches {Thermus thermophilus HB8 [TaxId: 300852]}
512-598 -40.700 31  d1hfel2 d.58.1.5 (L:2-86) Fe-only hydrogenase larger subunit, N-domain {Desulfovibrio desulfuricans [TaxId: 876]}
11 TM0011 TM0011 281892 Purified-2004-02-02 128 SCOP206 3-119 -14.500 16  d3iam2_ c.47.1.21 (2:) automated matches {Thermus thermophilus HB8 [TaxId: 300852]}
34-125 -37.300 28  d1m2da_ c.47.1.11 (A:) Thioredoxin-like 2Fe-2S ferredoxin {Aquifex aeolicus [TaxId: 63363]}
12 TM0012 TM0012 281893 Purified-2001-08-29 176 SCOP206 17-174 -78.800 27  d3iam2_ c.47.1.21 (2:) automated matches {Thermus thermophilus HB8 [TaxId: 300852]}
13 TM0013 TM0013 281894 Purified-2001-08-24 253 SCOP206 1-243 -77.400 19  d2q9ua1 d.157.1.3 (A:4-253) Nitric oxide reductase N-terminal domain {Giardia intestinalis [TaxId: 5741]}
14 TM0014 TM0014 281895 Purified-2001-01-30 278 SCOP206 39-188 -8.130 14  d1qkra_ a.24.9.1 (A:) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
15 TM0015 TM0015 281896 PDB-2007-09-14 192 SCOP206 6-192 -32.400 18  d2c42a4 c.64.1.1 (A:416-668) Pyruvate-ferredoxin oxidoreductase, PFOR, domain III {Desulfovibrio africanus [TaxId: 873]}
16 TM0016 TM0016 281897 Purified-2001-08-24 101 SCOP206 1-98 -15.000 21  d1kf6b1 a.1.2.1 (B:106-243) Fumarate reductase {Escherichia coli [TaxId: 562]}
35-93 -28.200 27  d1xera_ d.58.1.3 (A:) Ferredoxin {Sulfolobus sp. [TaxId: 2288]}
17 TM0017 TM0017 281898 Purified-2003-03-05 394 SCOP206 7-256 -76.700 29  d2c42a1 c.36.1.8 (A:2-258) Pyruvate-ferredoxin oxidoreductase, PFOR, domain I {Desulfovibrio africanus [TaxId: 873]}
257-394 -49.700 29  d2c42a3 c.48.1.3 (A:259-415) Pyruvate-ferredoxin oxidoreductase, PFOR, domain II {Desulfovibrio africanus [TaxId: 873]}
18 TM0018 TM0018 281899 Purified-2001-08-24 324 SCOP206 5-324 -61.200 26  d2c42a2 c.36.1.12 (A:786-1232) Pyruvate-ferredoxin oxidoreductase, PFOR, domains VI {Desulfovibrio africanus [TaxId: 873]}
19 TM0019 TM0019 281900 Crystal|NMR-2004-03-31 256 SCOP206 2-250 -94.700 31  d4gh5a_ c.2.1.0 (A:) automated matches {Xanthobacter autotrophicus [TaxId: 78245]}
20 TM0020 TM0020 281901 Purified-2001-08-24 127 SCOP206 39-109 -6.110 12  d1h67a1 a.40.1.1 (A:28-134) Calponin {Chicken (Gallus gallus) [TaxId: 9031]}


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ye Y, Li Z, and Godzik A. Modeling and Analyzing Three-Dimensional Structures of Human Disease Proteins Pacific Symposium on Biocomputing 11:439-450(2006) [PDF]