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anford Burnham Prebys Medical Discovery Institute
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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 1872next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 TM0001 TM0001 281882 Purified-2001-08-24 41 COG0516 5-33 -4.270 23  [Y] KOG2992 Nucleolar GTPase/ATPase p130
2 TM0002 TM0002 281883 Purified-2001-08-29 41 COG0516 8-35 -3.680 28  [J] COG0256 Ribosomal protein L18
3 TM0003 TM0003 281884 Purified-2001-12-06 40 COG0516 1-37 -3.980 13  [E] COG4401 Chorismate mutase
4 TM0004 TM0004 281885 Purified-2004-07-19 31 COG0516 3-30 -3.030 21  [D] COG2917 Intracellular septation protein A
5 TM0005 TM0005 281886 Purified-2001-01-30 650 COG0516 2-649 -140.000 23  [L] KOG1803 DNA helicase
6 TM0006 TM0006 281887 Diffraction|HSQC-2004-07-13 345 COG0516 9-345 -60.700 16  [E] COG3799 Methylaspartate ammonia-lyase
7 TM0007 TM0007 281888 Purified-2004-07-19 438 COG0516 56-364 -29.200 10  [R] COG1800 Predicted transglutaminase-like proteases
147-397 -32.900 16  [E] COG1305 Transglutaminase-like enzymes, putative cysteine proteases
238-429 -20.500 13  [D] COG5279 Uncharacterized protein involved in cytokinesis, contains TGc (transglutaminase/protease-like) domain
8 TM0008 TM0008 281889 Crystal|NMR-2001-04-01 224 COG0516 1-224 -79.800 31  [R] COG1878 Predicted metal-dependent hydrolase
9 TM0009 TM0009 281890 Purified-2001-02-14 142 COG0516 1-141 -49.100 18  [S] COG1633 Uncharacterized conserved protein
10 TM0010 TM0010 281891 Purified-2005-03-03 607 COG0516 1-98 -16.200 27  [C] COG3411 Ferredoxin
52-537 -107.000 34  [C] KOG2658 NADH:ubiquinone oxidoreductase, NDUFV1/51kDa subunit
542-597 -20.000 37  [C] COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit
11 TM0011 TM0011 281892 Purified-2004-02-02 128 COG0516 2-127 -38.000 24  [C] COG3411 Ferredoxin
12 TM0012 TM0012 281893 Purified-2001-08-29 176 COG0516 1-172 -81.500 26  [C] COG1905 NADH:ubiquinone oxidoreductase 24 kD subunit
13 TM0013 TM0013 281894 Purified-2001-08-24 253 COG0516 1-252 -66.300 15  [C] COG0426 Uncharacterized flavoproteins
14 TM0014 TM0014 281895 Purified-2001-01-30 278 COG0516 4-277 -41.800 22  [NT] COG0840 Methyl-accepting chemotaxis protein
15 TM0015 TM0015 281896 PDB-2007-09-14 192 COG0516 7-192 -29.500 21  [C] COG1014 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit
16 TM0016 TM0016 281897 Purified-2001-08-24 101 COG0516 8-95 -37.800 40  [C] COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit
17 TM0017 TM0017 281898 Purified-2003-03-05 394 COG0516 6-394 -96.500 31  [C] COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit
18 TM0018 TM0018 281899 Purified-2001-08-24 324 COG0516 26-290 -31.800 18  [C] COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit
19 TM0019 TM0019 281900 Crystal|NMR-2004-03-31 256 COG0516 2-251 -88.100 34  [IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
20 TM0020 TM0020 281901 Purified-2001-08-24 127 COG0516 4-127 -65.200 29  [D] COG0239 Integral membrane protein possibly involved in chromosome condensation


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ye Y, Li Z, and Godzik A. Modeling and Analyzing Three-Dimensional Structures of Human Disease Proteins Pacific Symposium on Biocomputing 11:439-450(2006) [PDF]