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anford Burnham Prebys Medical Discovery Institute
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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 13760next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 d1dlwa_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Ciliate (Paramecium caudatum) [TaxId: 5885]} 116 PfamA30U 1-115 -42.100 23  PF01152.19; Q7CX73_AGRFC/7-127; Bacterial-like globin
2 d2gkma_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Mycobacterium tuberculosis, HbN [TaxId: 1773]} 127 PfamA30U 13-127 -41.600 18  PF01152.19; Q7CX73_AGRFC/7-127; Bacterial-like globin
3 d2qrwa_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Mycobacterium tuberculosis, HbO [TaxId: 1773]} 126 PfamA30U 2-123 -72.700 33  PF01152.19; Q7CX73_AGRFC/7-127; Bacterial-like globin
4 d2bkma_ a.1.1.1 (A:) automated matches {Geobacillus stearothermophilus [TaxId: 1422]} 128 PfamA30U 5-122 -79.800 45  PF01152.19; Q7CX73_AGRFC/7-127; Bacterial-like globin
5 d4i0va_ a.1.1.1 (A:) automated matches {Synechococcus sp. [TaxId: 32049]} 123 PfamA30U 2-117 -36.300 17  PF01152.19; Q7CX73_AGRFC/7-127; Bacterial-like globin
6 d1asha_ a.1.1.2 (A:) Ascaris hemoglobin, domain 1 {Pig roundworm (Ascaris suum) [TaxId: 6253]} 147 PfamA30U 4-117 -38.000 13  PF00042.20; GLB8_CHITH/9-115; Globin
7 d2dc3a_ a.1.1.2 (A:) Cytoglobin {Human (Homo sapiens) [TaxId: 9606]} 172 PfamA30U 2-154 -10.500 17  PF11563.6; F0XJU9_GROCL/20-199; Protoglobin
7-116 -38.400 17  PF00042.20; GLB8_CHITH/9-115; Globin
8 d4hsxa_ a.1.1.2 (A:) Dehaloperoxidase {Amphitrite ornata [TaxId: 129555]} 137 PfamA30U 1-105 -41.600 23  PF00042.20; GLB8_CHITH/9-115; Globin
1-137 -9.640 PF11563.6; F0XJU9_GROCL/20-199; Protoglobin
9 d1ecaa_ a.1.1.2 (A:) Erythrocruorin {Midge (Chironomus thummi thummi), fraction III [TaxId: 7154]} 136 PfamA30U 1-134 -10.700 10  PF11563.6; F0XJU9_GROCL/20-199; Protoglobin
5-105 -46.600 50  PF00042.20; GLB8_CHITH/9-115; Globin
10 d1x9fd_ a.1.1.2 (D:) Extracellular dodecameric hemoglobin (erythrocruorin), subunit D1 {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} 140 PfamA30U 6-112 -36.200 19  PF00042.20; GLB8_CHITH/9-115; Globin
11 d1x9fc_ a.1.1.2 (C:) Extracellular dodecameric hemoglobin (erythrocruorin), subunit III (globin C) {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} 149 PfamA30U 9-119 -37.500 22  PF00042.20; GLB8_CHITH/9-115; Globin
12 d1cqxa1 a.1.1.2 (A:1-150) Flavohemoglobin, N-terminal domain {Alcaligenes eutrophus [TaxId: 106590]} 150 PfamA30U 2-147 -14.000 13  PF11563.6; F0XJU9_GROCL/20-199; Protoglobin
6-103 -19.700 16  PF00042.20; GLB8_CHITH/9-115; Globin
13 d1jl7a_ a.1.1.2 (A:) Glycera globin {Marine bloodworm (Glycera dibranchiata) [TaxId: 6350]} 147 PfamA30U 1-143 -10.600 14  PF11563.6; F0XJU9_GROCL/20-199; Protoglobin
6-111 -27.600 18  PF00042.20; GLB8_CHITH/9-115; Globin
14 d1it2a_ a.1.1.2 (A:) Hagfish hemoglobin {Inshore hagfish (Eptatretus burgeri) [TaxId: 7764]} 146 PfamA30U 7-146 -9.950 13  PF11563.6; F0XJU9_GROCL/20-199; Protoglobin
15-122 -39.700 20  PF00042.20; GLB8_CHITH/9-115; Globin
15 d1or4a_ a.1.1.2 (A:) Heme-based aerotactic transducer HemAT, sensor domain {Bacillus subtilis [TaxId: 1423]} 169 PfamA30U 22-169 -54.700 11  PF11563.6; F0XJU9_GROCL/20-199; Protoglobin
16 d1itha_ a.1.1.2 (A:) Hemoglobin {Innkeeper worm (Urechis caupo) [TaxId: 6431]} 141 PfamA30U 1-137 -10.500 10  PF11563.6; F0XJU9_GROCL/20-199; Protoglobin
6-112 -44.100 16  PF00042.20; GLB8_CHITH/9-115; Globin
17 d3g46a_ a.1.1.2 (A:) Hemoglobin I {Ark clam (Scapharca inaequivalvis) [TaxId: 6561]} 146 PfamA30U 8-146 -10.200 10  PF11563.6; F0XJU9_GROCL/20-199; Protoglobin
14-119 -40.500 17  PF00042.20; GLB8_CHITH/9-115; Globin
18 d1b0ba_ a.1.1.2 (A:) Hemoglobin I {Clam (Lucina pectinata) [TaxId: 244486]} 142 PfamA30U 1-140 -12.500 12  PF11563.6; F0XJU9_GROCL/20-199; Protoglobin
6-114 -40.900 29  PF00042.20; GLB8_CHITH/9-115; Globin
19 d1gcva_ a.1.1.2 (A:) Hemoglobin, alpha-chain {Houndshark (Mustelus griseus) [TaxId: 89020]} 140 PfamA30U 6-106 -36.100 13  PF00042.20; GLB8_CHITH/9-115; Globin
20 d3d1kb_ a.1.1.2 (B:) Hemoglobin, beta-chain {Antarctic fish (Trematomus newnesi) [TaxId: 35730]} 146 PfamA30U 7-111 -37.100 12  PF00042.20; GLB8_CHITH/9-115; Globin


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ye Y, Li Z, and Godzik A. Modeling and Analyzing Three-Dimensional Structures of Human Disease Proteins Pacific Symposium on Biocomputing 11:439-450(2006) [PDF]